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Key message: HSF family transcription factors were analyzed in genome of Chinese cabbage. Chromosomal locations showed that duplication might result in expansion. Response to abiotic stresses was elucidated in Chinese cabbage varieties. Abstract: The major heat shock factors regulating the heat stress response are heat shock transcription factors (HSFs), which interact with heat shock elements. In this study, Chinese cabbage (Brassica rapa L. ssp. pekinensis) HSFs were comprehensively analyzed. A total of 52 HSF family genes were identified for phylogenetic relationships and motif analysis based on the genome sequence of Chinese cabbage. All HSFs were divided into classes A, B, and C. The chromosomal locations and gene duplications of these HSFs were also presented. Nine potential duplication events were found in Chinese cabbage chromosomes. Expression of three HSF genes in two varieties of Chinese cabbage using quantitative real-time PCR revealed that BraHSF039 and BraHSF043 were up-regulated under temperature and salt stresses treatments, and only BraHSF043 gene was also down-regulated under salt stress in ‘Lubaisanhao’. BraHSF001 gene was down-regulated in the ‘Lubaisanhao’ variety under heat and cold stresses, under drought stress in ‘Qingdao 87-114’. These results can serve as a foundation for further studies on HSFs in Brassica.
Celery is a biennial herb of the Apiaceae family and is a leafy vegetable crop widely cultivated worldwide. TCP (teosinte branched1/cycloidea/proliferating cell factors), a transcription factor family, is involved in cell growth and leaf tissue proliferation. In this study, 32 AgTCP transcription factors were identified and analyzed based on the celery transcriptome and genome database and divided into two classes. Analysis of structural feature, phylogenetic tree, interaction network, and subcellular localization of AgTCP proteins was performed. It is shown that the AgTCP2 protein was positioned in the nucleus, and TCP proteins in the same group had higher similarity. Heatmap clusters of AgTCP genes expression levels during different celery leaf developmental stages suggested that the genes from the same evolutionary branch tended to form a cluster. The expression profiles of four AgTCP genes were detected at celery leaf developmental stages and under gibberellin (GA₃) treatment. As a CYC-type gene, AgTCP4 showed significantly increased expression levels under developmental stage and GA₃ treatment in ‘Liuhe Huangxinqin’. The results of this work give potential helpful information for further analysis of the role of AgTCP transcription factors in leaf development and hormone regulation in celery.
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