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Plant-plant interactions, which are defined as the effect of one plant on another of the same or different species, are inherently local in nature. Plants interact in both positive and negative ways, which are governed by the same underlying ecological dynamic processes. The Mexican endemic Picea chihuahuana Martínez is a largely untouched tree species and it is therefore an excellent model for estimating genetic potential of plant-plant interactions under natural conditions. Because of the scarce research examining plant-plant interactions at the genetic level,we tested the hypothesis that specific genetic variants of P. chihuahuana areassociated with (and likely selected by) the presence of particular neighbouring tree species. To explore this question, we applied AFLP genotyping to five P. chihuahuana populations in the State of Durango, North-western Mexico. Under the assumption that the variables genetic variant of P. chihuahuana and nearest-neighbour tree species are directly related to each other, the results show a statistically significant association between such genetic variants – at one AFLP locus in one Picea population – and two nearest-neighbour conifer species (P. chihuahuana Martínez and Pinus arizonica Engelm.). The findings indicate that interactions between genetic variants and species diversity may be crucial in shaping plant communities. However, further studies are required for a better understanding of the possible roles that such associations between genetic variants might play.
Amplified Fragment Length Polymorphism (AFLP), Simple Sequence Repeat (SSR) and Single Nucleotide Polymorphism (SNP), were applied to the tomato genome for assessment of polymorphism and for mapping. The polymorphism of AFLP was studied in twenty-one commercial tomato (L. esculentum) varieties. Four AFLP primer combinations produced 298 elear bands; an average of 75 bands per combination. SSR markers were generated from two sources: (1) size-selected genomic libraries screened with (AT)n, (CT)n, (GT)n, (ATT)n and (CTT)n probes. (2) GeneBank database. Primers were designed for 114 loci and used for genotyping 13 tomato varieties and three Lycopersicon species. Eighteen markers were used to evaluate the polymorphism among the commercial cultivars and were found to be a useful tool for cultivar identification. In-silico comparison of DNA sequences (ESTs and genes) of L. pennellii and L. esculentum, yielded 312 SNPs. Ten L. pennelli genomic fragments were sequenced and the comparison with L. esculentum yielded 22 SNPs. Another 19 SNPs were discovered by sequencing and comparing L. pennellii genomic DNA to L. esculentum DNA fragments containing SSRs. The average SNP frequency was found to be one in a few tens of base pairs. A total of 52 microsatellites, 159 polymorphic AFLP markers and six SNPs were mapped using the Introgression Lines generated by [1]. Map location and markers’ distribution are presented.
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