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High-throughput tag-sequencing (Tag-seq) from Illumina analysis, which is based on the Solexa Genome Analyzer platform, was applied to analyze the gene expression profiling of propamocarb (PM) treatment and control in cucumber fruit. Approximately 3.6 million complete clean sequence tags at PM treatment or control library were obtained with approximately 0.1 million distinct clean tag sequences. Approximately 41.79–43.15 % of the distinct clean tags were mapped unambiguously to the unigene database, and 32.54–33.46 % of the distinct clean tags were mapped to the cucumber genome database. The profiling analysis of the differentially expressed genes revealed the up-regulation of 546 genes and the downregulation of 185 genes with PM response. Furthermore, the differentially expressed genes mainly linked to pesticide detoxication, response to stress/stimulus, transporter/ signaling, and some important transcription factors. Finally, quantitative real-time polymerase chain reaction (qRT-PCR) and reverse transcription polymerase chain reaction (RT-PCR) using 16 genes independently verified the tag-mapped results. The present study reveals the comprehensive mechanisms of PM response in cucumber fruit.
Banana fruit are highly sensitive to chilling injury (CI), while the effect of different degrees of CI on the subsequent fruit ripening is largely unknown. In the present work, ripening characteristic of banana fruit after storage at 7 ºC for 3 days or for 8 days, and expression levels of eight genes associated with ethylene biosynthetic and signaling, including MaACS1, MaACO1, MaERS1, MaERS3, and MaEIL1–4, were investigated. The results showed that banana fruit stored at 7 ºC for 8 days exhibited more severe chilling symptoms than those at 7 ºC for 3 days. Compared with banana fruit stored at 7 ºC for 8 days, which showed abnormal ripening, more decrease in fruit firmness, while higher increase in ethylene production and hue angle were observed in banana fruit stored at 7 ºC for 3 days, which could ripening normally. Moreover, gene expression profiles during ripening revealed that ethylene biosynthetic and signaling genes were differentially expressed in peel and pulp of banana fruit after storage at 7 ºC for 3 days and 7 ºC for 8 days. In the peel of fruit storage at 7 ºC for 3 days, expression levels of MaACS1, MaACO1, MaEIL1, and MaEIL2 increased remarkably while MaERS3, MaEIL1, and MaEIL4 were enhanced in the fruit after storage at 7 ºC for 8 days. In the pulp, with the exception of MaACO1 and MaERS3, expression levels of other genes did not exhibit a significant difference, between the banana fruit storage at 7 ºC for 3 days and 7 ºC for 8 days. Taken together, our results suggest that differential expression of ethylene biosynthetic and signaling genes such as MaERS3, MaACO1, and MaEIL2, may be related to ripening behavior of banana fruit with different degrees of CI after cold storage.
Dwarfism was one of the most important agronomic traits in cucumber breeding. The current study was conducted to identify dwarf-related proteins using twodimensional electrophoresis. Twenty-two differentially expressed protein spots were detected between dwarf and vine genotypes while 20 of them were successfully identified by MALDI-TOF/TOF MS. Out of 20 identified proteins in dwarf genotype, 14 were up-regulated and six were down-regulated. The classification of differential proteins showed that the identified proteins were functionally involved in photosynthesis, energy metabolism, cytoskeletal functions, transduction and signal regulation, detoxification and redox regulation. Five differentially regulated proteins were analyzed using the technique quantitative real-time PCR (qRT-PCR). The results showed that four proteins, including histone deacetylase, the EIN2- like protein, chlorophyll A/B binding protein, and ubiquitin-conjugating enzyme Spm2 (E2) were up-regulated and one F-box family protein was down-regulated in the dwarf genotype. Further western blot analysis revealed that only E2 protein was detected in the dwarf genotype, indicating its important role in the cucumber dwarf trait.
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