RAPD analyses of some wild Triticum L. and Aegilops L. species and wheat cultivars in Turkey

• Autorzy: Cenkci S. , Yildiz M. , Konuk M. , Eren Y.
• Języki publikacji: EN

Abstrakty

EN

Phylogenetic relationships among wild Triticum and Aegilops species, bread wheat (Triticum aestivum) cultivars, and durum wheat (T. turgidum) cultivars were investigated using random amplified polymorphic DNA (RAPD) technique. Fourteen RAPD primers generated 328 polymorphic bands in 22 wheat species/cultivars which have the same or different genomes. DNA fragment size ranged from 290 bp to 2570 bp. In the RAPD analysis, wild Triticum and Aegilops species clustered together and were separated from all other wheat cultivars based on their genome constitution. T. monococcum and T. boeticum were closer to Aegilops species than to other wheat cultivars. T. turgidum cultivars were genetically less diverse than T. aestivum cultivars. RAPD markers specific to the D and U genomes were detected. There was a weak correlation between RAPD data and pedigree records of the cultivars sharing common ancestor(s). The results suggest that RAPD analysis can be used to distinguish wild Triticum and Aegilops species, and wheat cultivars. In addition, RAPD technique can be used to develop genome-specific markers.

Słowa kluczowe

EN

random amplified polymorphic DNA; wild plant; Triticum; Aegilops; plant species; wheat; plant cultivar; Turkey; phylogenetic relationship; genome; Triticum aestivum; Triticum turgidum; bread wheat; durum wheat

• Wydawca: -
• Czasopismo: Acta Biologica Cracoviensia. Series Botanica
• Rocznik: 2008
• Tom: 50
• Numer: 1
• Opis fizyczny: p.35-42,fig.,ref.

Twórcy

autor

Cenkci S.

• Department of Biology, Afyon Kocatepe University, 03200 Afyonkarahisar, Turkey

autor

Yildiz M.

autor

Konuk M.

autor

Eren Y.

Bibliografia

• Atienzar F, Evenden A, Jha A, Savva D, and Depledge M. 2000. Optimized RAPD analysis generates high-quality genomic DNA profiles at high annealing temperatures. Biotechniques 28: 52-54.
• Bhat KV, and Jarret RL. 1995. Random amplified polymorphic DNA and genetic diversity in Indian Musa germplasm. Genetic Resources and Crop Evolution 42: 107-118.
• Cao W, Hucl P, Scoles G, and Chibbar RN. 1998. Genetic diversity within spelta and macha wheats based on RAPD analysis. Euphytica 104: 181-189.
• Cao W, Scoles G, Hucl P, and Chibbar RN. 1999. The use of RAPD analysis to classify Triticum accessions. Theoretical and Applied Genetics 98: 602-607.
• Cao W, Hucl P, Scoles G, Chibbar RN, Fox PN, and Skovmand B. 2002. Cultivar identification and pedigree assessment of common wheat based on RAPD analysis. Wheat Information Service 95: 29-35.
• Chapman V, Miller TE, and Riley R. 1976. Equivalence of the A genome of bread wheat and that of T. urartu. Genetic Research 27: 69-76.
• Chen HB, Martin JM, Larvin M, and Talbert LE. 1994. Genetic diversity in hard red spring wheat based on sequence tagged site PCR markers. Crop Science 34: 1628-1632.
• Chen JM, Xue X, Cai D, Jensen B, and Chatterton NJ. 1998. Development and characterization of Elymus rectisetus species and accession-specific RAPD markers. In: Slinkkard AE [ed.], Proceedings of the 9th International Wheat Genetics Symposium, Vol. 3, 98-101. Univ. Extension Press, University of Saskatchewan, Saskatoon.
• Cipriani G, Bela R, and Testolin R. 1996. Screening RAPD primer for molecular taxonomy and cultivar fingerprinting in genus Actinidia. Euphytica 90: 169-174.
• Davis PH, Mill RR, and Tan K. 1985. Flora of Turkey and the East Aegean Islands, vol. 9. Edinburgh University Press, Edinburgh.
• Donini P, Law CR, Koebner RMD, Reeves JC, and Cooke RJ. 2000. Temporal trends in the diversity of UK wheats. Theoretical and Applied Genetics 100: 912-917.
• Doyle JJ, and Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-14.
• Dvorák J. 1976. The relationship between the genome of Triticum urartu and the A and B genomes of Triticum aestivum. Canadian Journal of Genetics and Cytology 18: 371-377.
• Dvorák J, McGuire PE, and Cassidy B. 1988. Apparent sources of the A genomes of wheats inferred from polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome 30: 680-689.
• Dvorák J, di Terlizzi P. Zhang HB. and Resta P. 1993. The evolution of polyploid wheats: identification of the A genome donor species. Genome 36: 21-31.
• Fahima T, Sun GL, Beharav A, Krugman T, Beiles A, and Nevo V. 1999. RAPD polymorphism of wild emmer wheat populations, Triticum dicoccoides in Israel. Theoretical and Applied Genetics 98: 434-447.
• He S, Ohm H, and Mackenzie S. 1992. Detection of DNA sequence polymorphisms among wheat varieties. Theoretical and Applied Genetics 84: 573-578.
• Hedge SG, Valkoun J, and Waines JG. 2000. Genetic diversity in wild wheats and goat grass. Theoretical and Applied Genetics 101: 309-316.
• Incirli A, and Akkaya MS. 2001. Assessment of genetic relationships in durum wheat cultivars using AFLP. Genetic Resources and Crop Evolution 48: 233-238.
• Jones N, Ougham H, and Thomas H. 1997. Markers and mapping: We are all geneticists now. New Phytologist 137: 165-177.
• Joshi CP, and Nguyen HT. 1993. Application of the random amplified polymorphic DNA technique for the detection of polymorphism among wild and cultivated tetraploid wheats. Genome 36: 602-609.
• Kimber G, and Feldman MM. 1987. Wild wheat and introduction, 1-4. Special report, 353 College of Agriculture University of Missouri, Columbia.
• Kimber G, and Tsunewakki K. 1988. Genome symbols and plasma types in the wheat group. In: Miller TE, Koebner RMD [eds.], 7th International Wheat Genetics Symposium, 1209-1210. Cambridge, England, Bath Press, Bath, Avon, UK.
• Landry BS, Li RQ, Cheung WY, and Graner RL. 1994. Phytogeny analysis of 25 apple rootstocks using RAPD markers and tactical gene tagging. Theoretical and Applied Genetics 89: 847-852.
• Lynch M, and Milligan BG. 1994. Analysis of population genetic structure wheat RAPD markers. Molecular Ecology 3: 91-99.
• Maric S, Bolaric S, Martintic J, Pejic I, and Kozumplik V. 2004. Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage. Plant Breeding 123: 366-369.
• Martos A, Royo C, Rharrabti Y, and Garcia del Moral LF. 2005. Using AFLPs to determine phylogenetic relationships and genetic erosion in durum wheat cultivars released in Italy and Spain throughout the 20th century. Field Crops Research 91: 107-116.
• Migdadi HM. Abdel MT, and Masoud S. 2004. Genetic diversity in some Aegilops species in Jordan as revealed by RAPDs. The Plant Genetic Resources Newsletter 139: 47-52.
• Nybom H. 1994. DNA fingerprinting - a useful tool in fruit breeding. Euphytica 77: 59-64.
• Okuno K, Ebana K, Noov B, and Yoshida H. 1998. Genetic diversity of Central Asian and North Caucasian Aegilops species as revealed by RAPD markers. Genetic Resources and Crop Evolution 45: 389-394.
• Page RDM. 1996. TreeView: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
• Pavlícek A, Hrdá Š, and Flegr J. 1999. FreeTree - freeware program for construction of phylogenetic trees on the basis of distance data and for bootstrap/jackknife analysis of the trees robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biologica (Praha) 45: 97-99.
• Reiter RS, Williams JGK, Feldmann KA, Rafalski JA, Tingey SV, and Scolnik PA. 1992. Global and local genome mapping in Arabidopsis thaliana by using recombinant inbred lines and random amplified polymorphic DNAs probe. Proceedings of the National Academy of Science of the USA 89: 1477-1481.
• Saitou N, and Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
• Tyrka M. 2002. A simplified AFLP method for fingerprinting of common wheat (Triticum aestivum L.) cultivars. Journal of Applied Genetics 43: 131-143.
• van Slageren MW. 1994. Wild wheats: A monograph of Aegilops L. and Amblyopyrum (Jaub. & Spach) Eig (Poaceae), 94-97. Wageningen Agricultural University Papers, Wageningen, The Netherlands.
• Wang RR-C, Cheng J, and Joppa LR. 1995. Production and identification of chromosome specific RAPD markers for durum wheat 'Langdon' disomic substitution lines. Crop Science 35: 886-888.
• Wang G-Z, Miyashita NT, and Tsunewaki K. 1997. Plasmon analyses of Triticum (wheats) and Aegilops: PCR-single-stranded conformational polymorphism (PCR-SSCP) analyses of organellar DNAs. Proceedings of the National Academy of Science of USA 94: 14570-14577.
• Wang JB, Wang C, Shi SH, and Zhong Y. 2000. ITS regions in diploids of Aegilops (Poaceae) and their phylogenetic implications. Hereditas 132: 209-213.