Late-Pleistocene phylogeography and demographic history of two evolutionary lineages of artibeus jamaicensis (Chiroptera: Phyllostomidae) in Mexico

• Autorzy: Ruiz E.A. , Vargas-Miranda B. , Zuniga G.
• Języki publikacji: EN

Abstrakty

EN

The Artibeus jamaicensis complex is an important component of the mammal biological diversity of the New World. Although there are numerous studies on the taxonomy and phylogeny of the complex, group relationships are still debated. Previous studies hypothesised that this species originated in South America and later colonised the Antilles Islands either through a northward migration or an eastward migration via Middle America. However, these studies do not include populations from Middle America west of the Yucatan Peninsula, making it difficult to obtain a clear description of the role of these populations in the evolutionary history of the species. In this study, we describe the phylogeography and demographic history of A. jamaicensis populations from Middle America west of the Yucatan Peninsula using cytochrome-b (612 bp) and D-loop (391 bp) mtDNA markers. Our phylogenetic analyses (maximum likelihood and Bayesian inference) did not recover clades corresponding to the previously recognised Middle American subspecies (A. j. triomylus and A. j. yucatanicus); rather, two haplogroups were observed, which showed extensive genetic diversity and strong genetic structure akin to that expected for a Middle American origin for the island populations. Bayesian skyline plots and mismatch distributions revealed that such haplogroups experienced a recent population expansion, which most likely took place in the late Pleistocene (100,000–216,000 BP). These estimates agree with earlier hypotheses that suggested a recent evolutionary history for A. jamaicensis, with hypotheses that suggested the existence of two different lineages migrating northwest from South America to Middle America, and with the possible colonisation of the Antilles Islands derived from both Yucatan Peninsula and northern South America.

• Wydawca: -
• Czasopismo: Acta Chiropterologica
• Rocznik: 2013
• Tom: 15
• Numer: 1
• Opis fizyczny: p.19-33,fig.,ref.

Twórcy

autor

Ruiz E.A.

• Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Col. Santo Tomas, CP. 11340, México D.F., México

autor

Vargas-Miranda B.

• Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Col. Santo Tomas, CP. 11340, México D.F., México
• Departamento de Ciencias de la Salud, Universidad Autónoma Metropolitana Unidad Iztapalapa, A.P. 55-535, México D.F., México

autor

Zuniga G.

• Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Col. Santo Tomas, CP. 11340, México D.F., México

Bibliografia

• 1. M. Anisimova , and O. Gascuel . 2006. Approximate likelihood-ratio test for branches: a fast, accurate and powerful alternative. Systematic Biology, 55: 539–552. Google Scholar
• 2. B. R. Barber , and J. Klicka . 2010. Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proceedings of the Royal Society, 277B: 2675–2681. Google Scholar
• 3. D. Bensason , D.-X. Zhang , D. L. Hartl , and G. M. Hewitt . 2001. Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends in Ecology and Evolution, 16: 314–321. Google Scholar
• 4. B. C. Carstens , J. Sullivan , L. M. Davalos , P. A. Larsen , and S. C. Pedersen . 2004. Exploring population genetic structure in three species of Lesser Antillean bats. Molecular Ecology, 13: 2557–2566. Google Scholar
• 5. T. A. Castoe , P. T. Chippendale , J. A. Campbell , L. K. Ammerman , and C. L. Parkinson . 2003. Molecular systematics of the Middle America jumping pitvipers (genus Atropoides) and phylogeography of the Atropoides nummifer complex. Herpetologica, 59: 420–431. Google Scholar
• 6. T. A. Castoe , J. M. Daza , E. N. Smith , S. M. M. U. Kuch , J. A. Campbell , P. T. Chippindale , and C. L. Parkinson . 2009. Comparative phylogeography of pitvipers suggests a consensus of ancient Middle American highland biogeography. Journal of Biogeography, 36: 88–103. Google Scholar
• 7. W. B. Davis 1970. The large fruit bats (genus Artibeus) of Middle America, with a review of the Artibeus jamaicensis complex. Journal of Mammalogy, 51: 105–122. Google Scholar
• 8. A. D. Ditchfield 2000. The comparative phylogeography of neotropical mammals: patterns of intraspecific mitochondrial DNA variation among bats cotrasted to nonvolant small mammals. Molecular Ecology, 9: 1307–1318. Google Scholar
• 9. A. J. Drummond , and A. Rambaut . 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7: 214. Google Scholar
• 10. A. J. Drummond , A. Rambaut , B. Shapiro , and O. G. Pybus . 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22: 1185–1192. Google Scholar
• 11. S. V. Edwards , and P. Beerli . 2000. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution, 54: 1839–1854. Google Scholar
• 12. L. Excoffier 2004. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Molecular Ecology, 13: 853–864. Google Scholar
• 13. L. Excoffier , P. E. Smouse , and J. M. Quattro . 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131: 479–491. Google Scholar
• 14. L. Excoffier , G. Laval , and S. Schneider . 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1: 47–50. Google Scholar
• 15. J. S. Farris , M. Kallersio , A. G. Kluge , and C. Bult . 1995. Constructing a significance test of congruence. Systematic Biology, 44: 570–572. Google Scholar
• 16. T. H. Fleming , K. L. Murray , and B. Carstens . 2009. Phylogeography and genetic structure of three evolutionary lineages of West Indian phyllostomid bats. Pp. 116–150, in Island bats: evolution, ecology and conservation ( T. H. Fleming and P. A. Racey , eds.). University of Chicago Press, Chicago, 549 pp. Google Scholar
• 17. Y.-X. Fu 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147: 915–925. Google Scholar
• 18. Y.-X. Fu , and W.-H. Li . 1993. Statistical test of neutrality of mutations. Genetics, 133: 693–709. Google Scholar
• 19. J. Garcia-Moreno , A. G. Navarro-Siguenza , A. T. Peterson , and L. A. Sanchez-Gonzalez . 2004. Genetic variation coincides with geographic structure in the common bush-tanager (Chlorospingus opthalmicus) complex from Mexico. Molecular Phylogenetics and Evolution, 33: 186–196. Google Scholar
• 20. J. A. Guerrero , E. De Luna , and D. Gonzalez . 2004. Taxonomic status of Artibeus jamaicensis triomylus inferred from molecular and morphometric data. Journal of Mammalogy, 85: 866–874. Google Scholar
• 21. L. M. Guevara-Chumacero , R. Lopez-Wilchis , F. F. Pedroche , J. Juste , C. Ibanez , and I. D. L. A. Barriga-Sosa . 2010. Molecular phylogeography of Pteronotus davyi (Chiroptera: Mormoopidae) in Mexico. Journal of Mammalogy, 91: 220–232. Google Scholar
• 22. S. Guindon , and O. Gascuel . 2003. Simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52: 696–704. Google Scholar
• 23. T. A. Hall 1999. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95–98. Google Scholar
• 24. C. O. Handley Jr. 1966. Descriptions of new bats (Chiroderma and Artibeus) from Mexico. Anales del Instituto de Biologia, University of Mexico, 36: 297–301. Google Scholar
• 25. C. O. Handley Jr. , A. L. Gardner , and D. E. Wilson . 1991a. Food habits. Pp. 141–146, in Demography and natural history of the common fruit bat Artibeus jamaicensis on Barro Colorado Island, Pamana (C. O. Handley Jr., D. E. Wilson , and A. L. Gardner , eds.). Smithsonian Institution Press, Washington, D.C., 173 pp. Google Scholar
• 26. C. O. Handley Jr. , A. L. Gardner , and D. E. Wilson . 1991b. Movements. Pp. 89–130, in Demography and natural history of the common fruit bat Artibeus jamaicensis on Barro Colorado Island, Panama (C. O. Handley Jr., D. E. WilSon , and A. L. Gardner , eds.). Smithsonian Institution Press, Washington, D.C., 173 pp. Google Scholar
• 27. H. Harpending 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66: 591–600. Google Scholar
• 28. G. M. Hewitt 2000. The genetic legacy of the Ice Ages. Nature, 405: 907–913. Google Scholar
• 29. S. Y. W. Ho , and M. J. Phillips . 2009. Account for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology, 58: 367–380. Google Scholar
• 30. S. Y. W. Ho , U. Saarma , R. Barnett , J. Haile , and B. ShaPiro . 2008. The effect of inappropriate calibration: three case studies in molecular ecology. PLoS ONE, 3: e1615. Google Scholar
• 31. F. G. Hoffmann , and R. J. Baker . 2001. Systematics of bats of the genus Glossophaga (Chiroptera: Phyllostomidae) and phylogeography in G. soricina based on the cytochrome-b gene. Journal of Mammalogy, 82: 1092–1101. Google Scholar
• 32. J. P. Huelsenbeck , and F. Ronquist . 2001. Mr Bayes: bayesian inference of phylogeny. Bioinformatics, 17: 754–755. Google Scholar
• 33. J. N. Kerhoulas , and B. S. Arbogast . 2010. Molecular systematics and Pleistocene biogeography of Mesoamerican flying squirrels. Journal of Mammalogy, 91: 654–667. Google Scholar
• 34. P. A. Larsen , S. R. Hoofer , M. C. Bozeman , S. C. Pedersen , H. H. Genoways , C. J. Phillips , D. E. Pumo , and R. J. Baker . 2007. Phylogenetics and phylogeography of the Artibeus jamaicensis complex based on cytochrome-b DNA sequences. Journal of Mammalogy, 88: 712–727. Google Scholar
• 35. P. A. Larsen , M. R. Marchan-Rivadeneira , and R. J. Baker . 2010. Taxonomic status of Andersen's fruit-eating bat (Artibeus jamaicensis aequatorialis) and revised classification of Artibeus (Chiroptera: Phyllostomidae). Zootaxa, 2648: 45–60. Google Scholar
• 36. P. Librado , and J. Rosas . 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25: 1451–1452. Google Scholar
• 37. B. K. Lim , M. D. Engstrom , T. E. Lee , J. C. Patton Jr. , and J. W. Bickham . 2004. Molecular differentiation of large species of fruit-eating bats (Artibeus) and phylogenetic relationships based on the cytochrome b gene. Acta Chiropterologica, 6: 1–12. Google Scholar
• 38. B. K. Lim , M. D. Engstrom , J. C. Patton , and J. W. Bickham . 2008. Systematic review of small fruit-eating bats (Artibeus) from the Guianas, and a re-evaluation of A. glaucus bogotensis. Acta Chiropterologica, 10: 243–256. Google Scholar
• 39. M. Nei 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 23: 341–369. Google Scholar
• 40. J. Ortega , and H. T. Arita . 1999. Structure and social dynamics of harem groups of Artibeus jamaicensis (Chiroptera: Plyllostomidae). Journal of Mammalogy, 80: 1173–1185. Google Scholar
• 41. J. Ortega , J. A. Guerrero , and J. E. Maldonado . 2008. Aggression and tolerance by dominant males of Artibeus jamacicensis: strategies to maximaze fitness in harem groups. Journal of Mammalogy, 89: 1372–1378. Google Scholar
• 42. E. Petit , E. Laurent , and M. Frieder . 1999. No evidence of bottleneck in the postglacial recolonization of Europe by the noctule bat (Nyctalus noctula). Evolution, 53: 1247–1258. Google Scholar
• 43. R. J. Petit , J. Duminil , S. Fineschi , A. Hampe , D. Salvini , and G. G. Vendramin . 2005. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology, 14: 689–701. Google Scholar
• 44. C. J. Phillips , D. E. Pumo , H. H. Genoways , P. E. Ray , and C. A. Briskey . 1991. Mitochondrial DNA evolution and phylogeography in two Neotropical fruit bats, Artibeus jamaicensis and Artibeus lituratus. Pp. 97–123, in Latin American mammalogy, history, biodiversity, and conservation (M. A. Mares and D. J. Schmidly , eds.). University of Oklahoma Press, Norman, 486 pp. Google Scholar
• 45. D. Posada , and T. R. Buckley . 2004. Model selection and model averaging in phylogenetics: advantages of AIC and Bayesian approaches over likelihood ratio tests. Systematic Biology, 53: 793–808. Google Scholar
• 46. D. Posada , and K. A. Crandall . 1998. Modeltest: testing the model of DNA evolution. Bioinformatics, 14: 817–818. Google Scholar
• 47. D. E. Pumo , E. Z. Goldin , B. Elliot , C. J. Phillips , and H. H. Genoways . 1988. Mitochondrial DNA polymorphism in three Antill ean island populations of the fruit bat, Artibeus jamaicensis. Molecular Biology and Evolution, 5: 79–89. Google Scholar
• 48. D. E. Pumo , I. Kim , J. Remsen , C. J. Phillips , and H. H. Genoways . 1996. Molecular systematics of the fruit bat, Artibeus jamaicensis: origin of an unusual island population. Journal of Mammalogy, 77: 491–503. Google Scholar
• 49. D. E. Pumo , P. S. Finamore , W. R. Franek , C. J. Phillips , S. Tarzami , and D. Balzarano . 1998. Complete mitochondrial genome of a Neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the relationships of bats to other Eutherian Mammals. Journal of Molecular Evolution, 47: 709–717. Google Scholar
• 50. A. Rambaut , and A. J. Drummond . 2009. Tracer v1.5. Available from http://tree.bio.ed.ac.uk/software/tracer/. Google Scholar
• 51. S. E. Ramos-Onsins , and J. Rozas . 2002. Statistical properties of new neutrality test against population growth. Molecular Biology and Evolution, 19: 2092–2100. Google Scholar
• 52. R. A. F. Redondo , L. P. S. Brina , R. F. Silva , A. D. Dichtfield , and R. F. Santos . 2008. Molecular systematics of genus Artibeus (Chiroptera: Phyllostomidae). Molecular Phylogenetics and Evolution, 49: 44–58. Google Scholar
• 53. F. Rodriguez , J. L. Oliver , A. Marin , and M. J. R. Medina . 1990. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology, 142: 485–501. Google Scholar
• 54. A. R. Rogers , and H. C. Harpending . 1992. Population growth makes waves in he distribution of pairwise genetic differences. Molecular Biology and Evolution, 9: 552–569. Google Scholar
• 55. F. Ronquist , and J. P. Huelsenbeck . 2003. MRBAYES: bayesian phylogenies inferences under mixed models. Bioinformatics, 19: 1572–1574. Google Scholar
• 56. S. Schneider , and L. Excoffier . 1999. Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics, 152: 1079–1089. Google Scholar
• 57. N. B. Simmons 2005. Order Chiroptera. Pp. 312–519, in Mammal species of the World: a taxonomic and geographic reference (D. E. Wilson and D. M. Reeder , eds.). Johns Hopkins University Press, Baltimore, MD, 2142 pp. Google Scholar
• 58. M. Slatkin , and R. R. Hudson . 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129: 555–562. Google Scholar
• 59. H. Song , J. E. Buhay , M. F. Whiting , and K. A. Crandall . 2008. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proceedings of the National Academy of Sciences of the United States of America, 105: 13486–13491. Google Scholar
• 60. E. H. Studier , and D. E. Wilson . 1991. Physiology. Pp. 9–18, in Demography and natural history of the common fruit bat Artibeus jamaicensis on Barro Colorado Island, Panama (C. O. Handley Jr., D. E. Wilson and A. L. Gardner , eds.). Smithsonian Institution Press, Washington, D.C., 173 pp. Google Scholar
• 61. D. L. Swofford 2000. PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, MA. Google Scholar
• 62. F. Tajima 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123: 585–595. Google Scholar
• 63. K. Tamura , and M. Nei . 1993. Estimation of the number of substitutions in the control region mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10: 512–526. Google Scholar
• 64. B. Tandler , T. Nagato , and C. J. Phillips . 1986. Systematic implications of comparative ultrastructure of secretory acini in the submandibular salivary gland in Artibeus (Chiroptera: Phyllostomidae). Journal of Mammalogy, 67: 81–90. Google Scholar
• 65. J. D. Thompson , T. J. Gibson , F. Plewniak , F. Jeanmougin , and G. D. Higgins . 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by analysis tools. Nucleic Acids Research, 24: 4876–4882. Google Scholar
• 66. P. M. Velazco , and B. D. Patterson . 2008. Phylogenetics and biogeography of the broad-nosed bats, genus Platyrrhinus (Chiroptera: Phyllostomidae). Molecular Phylogenetics and Evolution, 49: 749–759. Google Scholar
• 67. B. S. Weir , and C. C. Cockerham . 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38: 1358–1370. Google Scholar
• 68. S. Wright 1951. The gentical structure of populations. Annals of Eugenics, 15: 323–354. Google Scholar
• 69. A. D. Yoder , J. A. Irwin , and B. A. Payseur . 2001. Failure of the ILD to determine data compatibility for slow loris phytogeny. Systematic Biology, 50: 408–424. Google Scholar

Uwagi

rekord w opracowaniu