A Molecular Phylogenetic Reevaluation of the Tribe Nycticeiini (Chiroptera: Vespertilionidae)

• Autorzy: Roehrs Z.P. , Lack J. B. , Van Den Bussche R. A.
• Języki publikacji: EN

Abstrakty

EN

Monophyly of the tribe Nycticeiini (Baeodon, Nycticeinops, Nycticeius, Otonycteris, Rhogeessa, Scoteinus [= Scoteanax and Scotorepens], Scotoecus, Scotomanes, and Scotophilia) has been challenged by new datasets over the last two decades including baculum morphology, cytogenetics, and mitochondrial ribosomal sequence data. These studies have resulted in new classifications for the NycticeiusAike bats, but only one study has empirically tested Nycticeiini monophyly. In this study, a suite of nuclear markers including both exon (APOB, DMP1, RAG2) and intron (PRKCI, STAT5A, THY) gene regions were used with previously studied mtDNA sequences (12S rRNA, tRNAVal, 16S rRNA) to test Nycticeiini monophyly and develop new hypotheses for relationships of Nycticeius-Wke bats within Vespertilioninae. Although results of these phylogenetic analyses did not fully resolve phylogenetic relationships for all taxa historically included in Nycticeiini, they did reject the validity of Nycticeiini. Taxa historically circumscribed in this tribe were found scattered throughout generated phylogenies, with Scotoecus aligning basal to Pipistrellus-Nyctalus, Nycticeinops with the Hypsugine group, Scotomanes with Eptesicus, and Rhogeessa with Antrozous.

• Wydawca: -
• Czasopismo: Acta Chiropterologica
• Rocznik: 2011
• Tom: 13
• Numer: 1
• Opis fizyczny: p.17-31,fig.,ref.

Twórcy

autor

Roehrs Z.P.

• Department of Zoology, Oklahoma State University, 430 Life Sciences West, Stillwater, Oklahoma 74078, USA

autor

Lack J. B.

autor

Van Den Bussche R. A.

Bibliografia

• Ärnbäck-Christie-Linde, A. 1909. On intermediate forms among Chiroptera. Zoologischer Anzeiger, 34: 572-582.
• Baurain, D., H. Brinkmann, and H. Philippe. 2007. Lack of resolution in the animal phylogeny: closely spaced cladoge- neses or undetected systematic errors? Molecular Biology and Evolution, 24: 6-9.
• Bickham, J. W. 1979. Chromosomal variation and evolutionary relationships of vespertilionid bats. Journal of Mammalogy, 60: 350-363.
• Brinkmann, H., and H. Philippe. 2008. Animal phylogeny and large-scale sequencing: progress and pitfalls. Journal of Systematics and Evolution, 46: 274—286.
• De Queiroz, A. 1993. For consensus (sometimes). Systematic Biology, 42: 368-372.
• Eick, G. N., D. S. Jacobs, and C. A. Matthee. 2005. A nuclear DNA phylogenetic perspective on the evolution of echolocation and historical biogeography of extant bats (Chiroptera). Molecular Biology and Evolution, 22: 1869-1886.
• Ellerman, J. R., and T. C. S. Morrison-Scott. 1951. Checklist of Palaearctic and Indian mammals 1758 to 1946. Trustees of the British Museum (Natural History), London, 810 pp.
• Ellerman, J. R., T. C. S. Morrison-Scott, and R. W. Hayman. 1953. Southern African mammals 1758 to 1951: a reclassification. Trustees of the British Museum (Natural History), London, 363 pp.
• Heller, K.-G., and M. Volleth. 1984. Taxonomie position of 'Pipistrellus societatis' Hill, 1972 and the karyological characteristics of the genus Eptesicus (Chiroptera: Vespertilionidae). Zeitschrift für Zoologische Systematik und Evolutionsforschung, 22: 65-77.
• Hill, J. E„ and D. L. Harrison. 1987. The baculum in the Vespertilioninae (Chiroptera: Vespertilionidae) with a systematic review, a synopsis of Pipistrellus and Eptesicus, and the descriptions of a new genus and subgenus. Bulletin of the British Museum (Natural History), Zoology, 52: 225-305.
• Hoofer, S. R., and R. A. Van Den Bussche. 2001. Phylogenetic relationships of plecotine bats and allies based on mito­chondrial ribosomal sequences. Journal of Mammalogy, 82: 131-137.
• Hoofer, S. R., and R. A. Van Den Bussche. 2003. Molecular phylogenetics of the chiropteran family Vespertilionidae. Acta Chiropterologica, 5(Supplement): 1-63.
• Hoofer, S. R., S. A. Reeder, E. W. Hansen, and R. A. Van Den Bussche. 2003. Molecular phylogenetics and taxonomie review of noctilionoid and vespertilionoid bats (Chiroptera: Yangochiroptera). Journal of Mammalogy, 84: 809-821.
• Horáček, I., O. Fejfar, and P. Hulva. 2006. A new genus of vespertilionid bat from Early Miocene of Jebel Zelten, Libya, with comments on Scotophilus and early history of vespertilionid bats (Chiroptera). Lynx (N.S.), 37: 131-150.
• Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17: 754-755.
• Kitchener, D. J., and N. Caputi. 1985. Systematic revision of Australian Scoteanax and Scotorepens (Chiroptera: Vespertilionidae), with remarks on relationships to other Nycticeiini. Records of the Western Australia Museum, 12: 85-146.
• Knowles, L. L. 2009. Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology, 58: 463-467.
• Koopman, K. F. 1975. Bats of Sudan. Bulletin of the American Museum of Natural History, 154: 353-444.
• Koopman, K. F. 1978. The genus Nycticeius (Vespertilionidae), with special reference to tropical Australia. Pp. 165-171, in Proceedings of the Fourth International Bat Research Conference, Nairobi, Kenya, 1975 (R. J. Olembo, J. B. Castelino, and F. A. Mutere, eds.). Kenya Literature Bureau, Nairobi, 328 pp.
• Koopman, K. F. 1984. A synopsis of the families of bats - part VII. Bat Research News, 25: 25-27.
• Koopman, K. F. 1994. Chiroptera: systematics. Handbook of zoology: a natural history of the phyla of the animal kingdom. Walter de Gruyter, Berlin, 8(60): 1-217.
• Koopman, K. F., and J. K. Jones, Jr. 1970. Classification of bats. Pp. 22-28, in About bats: a chiropteran biology symposium (B. H. Slaughter and D. W. Walton, eds.). Southern Methodist University Press, Dallas, Texas, 339 pp.
• Lack, J. B„ and R. A. Van Den Bussche. 2010. Identifying the confounding factors in resolving phylogenetic relationships in Vespertilionidae. Journal of Mammalogy, 91: 1435-1448.
• Lack, J. B., Z. P. Roehrs, C. E. Stanley, Jr., M. Ruedi, and R. A. Van Den Bussche. 2010. Molecular phylogenetics of Myotis suggests familial-level divergence for the genus Cistugo (Chiroptera). Journal of Mammalogy, 91: 976-992.
• Liu, L., and D. K. Pearl. 2007. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology, 56: 504-514.
• Liu, L., D. K. Pearl, R. T. Brumfield, and S. V. Edwards. 2008. Estimating species trees using multiple-allele DNA sequence data. Evolution, 62: 2080-2091.
• Liu, L., L. Yu, D. K. Pearl, and S. V. Edwards. 2009. Estimating species phylogenies using coalescence times among sequences. Systematic Biology, 58: 468-477.
• Longmire, J. L., M. Maltbie, and R. J. Baker. 1997. Use of iysis buffer' in DNA isolation and its implication for museum collections. Occasional Papers, Museum of Texas Tech University, 163: 1-3.
• Lutzoni, F., P. Wagner, V. Reeb, and S. Zoller. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology, 49: 628-651.
• Maddison, W. P., and D. R. Maddison. 2000. MacClade: analysis of phylogeny and character evolution, v. 4.05. Sinauer Associates, Inc., Sunderland, Massachusetts.
• McKenna, M. C., and S. K. Bell. 1997. Classification of mammals: above the species level. Columbia University Press, New York, 631 pp.
• Miller, G. S., Jr. 1897. Revision of the North American bats of the family Vespertilionidae. North American Fauna, 13: 1-136.
• Miller, G. S., Jr. 1907. The families and genera of bats. Bulletin of the United States National Museum, 57: 1-282.
• Philippe, H., and M. J. Telford. 2006. Large-scale sequencing and the new animal phylogeny. Trends in Ecology and Evolution, 21: 614-620.
• Posada, D„ and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics, 14: 817-818.
• Rodriguez, F., J. L. Oliver, A. Marín, and J. R. Medina. 1990. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology, 142: 485-501.
• Rodríguez-Ezpeleta, N., H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, and H. Philippe. 2007. Detecting and overcoming systematic errors in genome-scale phytogenies. Systematic Biology, 56: 389-399.
• Roehrs, Z. P. 2009. Vespertilioninae systematics: using mitochondrial and nuclear markers to elucidate phylogenetics relationships. Ph.D. Dissertation, Oklahoma State University, Stillwater, Oklahoma, 149 pp.
• Roehrs, Z. P., J. B. Lack, and R. A. Van Den Bussche. 2010. Tribal phylogenetic relationships within Vespertilioninae (Chiroptera: Vespertilionidae) based on mitochondrial and nuclear sequence data. Journal of Mammalogy, 91: 1073-1092.
• Ruedas, L. A., T. E. Lee, Jr., J. W. Bickham, and D. A. Schlitter. 1990. Chromosomes of five species of vespertilionid bats from Africa. Journal of Mammalogy, 71: 94-100.
• Ruedas, L. A., J. Salazar-Bravo, J. W. Dragoo, and T. L. Yates. 2000. The importance of being earnest: what, if anything, constitutes a 'specimen examined?' Molecular Phylogenetics and Evolution, 17: 129-132.
• Simmons, N. B. 1998. A reappraisal of interfamilial relationships of bats. Pp. 3-26, in Bat biology and conservation (T. H. Kunz and P. A. Racey, eds.). Smithsonian Institution Press, Washington D.C., 365 pp.
• Simmons, N. B. 2005. Order Chiroptera. Pp. 312-529, in Mammal species of the World: a taxonomie and geographic reference, 3rd edition (D. E. Wilson and D. M. Reeder, eds.). The Johns Hopkins University Press, Baltimore, Maryland, 1: i-xxvi, 1-743.
• Simmons, N. B., and J. H. Geisler. 1998. Phylogenetic relationships of Icaronycteris, Archaeonycteris, Hassianycteris and Palaeochiropteryx to extant bat lineages, with comments on the evolution of echolocation and foraging strategies in Microchiroptera. Bulletin of the American Museum of Natural History, 235: 1-182.
• Simpson, G. G. 1945. The principles of classification and a classification of mammals. Bulletin of the American Museum of Natural History, 85: i-xvi, 1-350.
• Swofford, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods) 4.0 beta. Sinauer Associates, Inc., Sunderland, Massachusetts.
• Tate, G. H. H. 1942. Results of the Archbold expeditions. No. 47: Review of the Vespertilioninae bats, with special attention to genera and species of the Archbold collections. Bulletin of the American Museum of Natural History, 80: 221-296.
• Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL_W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22: 4673-4680.
• Van Den Bussche, R. A., and S. R. Hoofer. 2000. Further evidence for inclusion of the New Zealand short-tailed bat (Mystacina tuberculata) within Noctilionoidea. Journal of Mammalogy, 81: 865-874.
• Van Den Bussche, R. A., and S. R. Hoofer. 2001. Evaluating monophyly of Nataloidea (Chiroptera) with mitochondrial DNA sequences. Journal of Mammalogy, 82: 320-327.
• Van Den Bussche, R. A., S. A. Reeder, E. W. Hansen, and S. R. Hoofer. 2003. Utility of the Dentin Matrix Protein 1 (DMP1) gene for resolving mammalian intraordinal phylogenetic relationships. Molecular Phylogenetics and Evolution, 26: 89-101.
• Volleth, M., and C. R. Tidemann. 1991. The origin of the Australian Vespertilioninae bats, as indicated by chromosomal studies. Zeitschrift für Säugetierkunde, 56: 321-330.
• Volleth, M., and K.-G. Heller. 1994. Phylogenetic relationships of vespertilionid genera (Mammalia: Chiroptera) as revealed by karyological analysis. Zeitschrift für Zoologische Systematik und Evolutionsforschung, 32: 11-34.
• Volleth, M., K.-G. Heller, and J. Fahr. 2006. Phylogenetic relationships of three 'Nycticeiini' genera (Vespertilionidae, Chiroptera, Mammalia) as revealed by karyological analysis. Zeitschrift für Säugetierkunde, 71: 1-12.
• Zima, J., and I. Horáček. 1985. Synopsis of karyotypes of vespertilionid bats (Mammalia: Chiroptera). Acta Universitatis Carolinae — Biologica, 1981: 311-329.

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