PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników

Czasopismo

2013 | 58 | 1 |

Tytuł artykułu

Evolutionary history of the sable (Martes zibellina brachyura) on Hokkaido inferred from mitochondrial Cytb and nuclear Mc1r and Tcf25 gene sequences

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
We examined sequence variation in mitochondrial and nuclear genes of seven species of the genus Martes (Mustelidae, Carnivora): Martes americana (American marten), Martes flavigula (yellow-throated marten), Martes foina (beech marten), Martes martes (pine marten), Martes melampus (Japanese marten), Martes pennanti (fisher) and Martes zibellina (sable), focusing on the phylogenetic history of the Hokkaido subspecies of the sable, Martes zibellina brachyura. Nucleotide sequence analysis of the mitochondrial cytochrome b gene confirmed the view that the Hokkaido sable population has lower genetic diversity. In contrast, network analysis of a nuclear gene related to coat colour, melanocortin-1 receptor (Mc1r), revealed two different haplogroups for this population: one shared with that of Russian sables and the other specific to this population but with a close relationship with the American and Japanese martens, implying that these endemic haplotypes are composed of uncharacterised ancestral lineages of a past population. We also examined the sequence variation in a neighbouring nuclear gene, transcription factor 25 (Tcf25), located about 5 kb upstream from the Mc1r gene, and found similar trends. The sable genome leaves the impression that Hokkaido hosted ancient marten lineages, with subsequent recent migrations from the continent. The validity of a candidate Mc1r mutation for the entirely yellow coat observed on Hokkaido sables was also discussed.

Wydawca

-

Czasopismo

Rocznik

Tom

58

Numer

1

Opis fizyczny

p.13-24,fig.,ref.

Twórcy

autor
  • Laboratory of Ecology and Genetics, Graduate School of Environmental Earth Science, Hokkaido University, Kita-ku, Sapporo 060-0810, Japan
autor
  • Laboratory of Animal Cell Technology, Faculty of Life Science and Technology, Fukuyama University, Higashimura-cho, Aza, Sanzo, 985, Fukuyama 729-0292, Japan
autor
  • Laboratory of Ecology and Genetics, Graduate School of Environmental Earth Science, Hokkaido University, Kita-ku, Sapporo 060-0810, Japan
autor
  • Taikyu High School, 1985 Yuasa-cho, Arida-gun, Wakayama 643-0004, Japan
  • Laboratory of Evolutionary Zoology and Genetics, Institute of Biology and Soil Science, Far East Branch, Russian Academy of Sciences, Vladivostok, 690022, Russia
autor
  • Laboratory of Ecology and Genetics, Graduate School of Environmental Earth Science, Hokkaido University, Kita-ku, Sapporo 060-0810, Japan

Bibliografia

  • Anderson E (1994) Evolution, prehistoric distribution, and systematics of Martes. In: Burkirk SW, Harestad AS, Raphael MG, Powell RA (eds) Martens, sables, and fishers: biology and conservation. Cornell University Press, Ithaca, pp 13–25
  • Avise JC (2000) Phylogeography—the history and formation of species. Harvard University Press, Cambridge
  • Bandelt H-J, Foster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48
  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
  • Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247–276
  • Hewitt GM (1999) Post-glacial re-colonization of European biota. Biol J Linn Soc 68:87–112
  • Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405:907–913
  • Hewitt GM (2001) Speciation, hybrid zones and phylogeography—or seeing genes in space and time. Mol Ecol 10:537–549
  • Hewitt GM (2004) Genetic consequences of climatic oscillations in the Quaternary. Phil Trans R Soc Lond B 359:183–195
  • Hewitt GM (2011) Quaternary phylogeography: the roots of hybrid zones. Genetica 139:617–638
  • Hosoda T, Suzuki H, Iwasa MA, Hayashida M, Watanabe S, Tatara M, Tsushiya K (1999) Genetic relationships within and between the Japanese marten Martes melampus and the sable Martes zibellina, based on variation of mitochondrial DNA and nuclear ribosomal DNA. Mamm Stud 24:25–33
  • Hosoda T, Suzuki H, Harada M, Tsuchiya K, Han S-H, Zhang Y-P, Kryukov AP, Lin L-K (2000) Evolutionary trends of the mitochondrial lineage differentiation in species of genera Martes and Mustela. Genes Genet Syst 75:233–243
  • Hosoda T, Sato JJ, Shimada T, Campbell KL, Suzuki H (2005) Independent non-frameshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages. J Hered 95:607–623
  • Hosoda T, Sato JJ, Lin L-K, Chen Y-J, Harada M, Suzuki H (2011) Phylogenetic history of mustelid fauna in Taiwan inferred from mitochondrial genetic loci. Can J Zool 89:559–569
  • Inoue T, Nonaka N, Mizuno A, Morishima Y, Sato H, Katakura K, Oku Y (2007) Mitochondrial DNA phylogeography of the red fox (Vulpes vulpes) in northern Japan. Zool Sci 24:1178–1186
  • Inoue T, Murakami T, Abramov AV, Masuda R (2010) Mitochondrial DNA control region variations in the sable Martes zibellina of Hokkaido Island and the Eurasian continent, compared with the Japanese marten M. melampus. Mamm Stud 35:145–155
  • Inukai T (1975) Animals in Northernmost Japan (Hoppou Doubutsushi). Hokuensha, Japan, in Japanese
  • Jensen-Seaman M, Furey T, Payseur B, Lu Y, Roskin KM, Chen CF, Thomas MA, Haussler D, Jacob HJ (2004) Comparative recombination rates in the rat, mouse and human genomes. Genome Res 14:528–538
  • Kawamura Y (2007) Last glacial and Holocene land mammals of the Japanese islands: their fauna, extinction and immigration. Quat Res 46:171–177
  • Koepfli K-P, Deere KA, Slater GJ, Begg C, Begg K, Grassman L, Lucherini M, Veron G, Wayne RK (2008) Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biol 6:1–22
  • Koopman WJM, Li Y, Coart E, van de Weg WE, Vosman B, Roldán-Ruiz I, Smulders MJ (2007) Linked vs. unlinked markers: multilocus microsatellite haplotype-sharing as a tool to estimate gene flow and introgression. Mol Ecol 16:243–256
  • Kurose N, Masuda R, Siriaroonrat B, Yoshida MC (1999) Intraspecific variation of mitochondrial cytochrome b gene sequences of the Japanese marten Martes melampus and the Sable Martes zibellina (Mustelidae, Carnivora, Mammalia) in Japan. Zool Sci 16:693–700
  • Li B, Xu YC, Ma Y, Elmeros M, Lan TM, Bai SY (2011) A PCR-RFLP based method to distinguish Sable (Martes zibellina) and Pine marten (M. martes). Acta Theriol 56:283–288
  • Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452
  • Malyarchuk BA, Petrovskaya AV, Derenko MV (2010) Intraspecific structure of sable Martes zibellina L. inferred from nucleotide variation of the mitochondrial DNA cytochrome b gene. Russ J Genet 46:64–68
  • Masuda R (2009) Martes melampus (Wagner, 1840). In: Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T (eds) The wild mammals of Japan. Shokadoh, Kyoto, pp 250–251
  • Matsuhashi T, Masuda R, Mano T, Yoshida MC (1999) Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population. Mol Biol Evol 16:676–684
  • Matsuhashi T, Masuda R, Mano T, Murata K, Aiurzaniin A (2001) Phylogenetic relationships among worldwide populations of the brown bear Ursus arctos. Zool Sci 18:1137–1143
  • McKay BD (2012) A new timeframe for the diversification of Japan’s mammals. J Biogeogr 39:1134–1143
  • Mead RA (1994) Reproduction in Martes. In: Buskirk SW, Harestad AS, Raphael MG, Powell RA (eds) Martens, sables, and fishers: Biology and conservation. Cornell University Press, Ithaca, pp 404–422
  • Monakhov VG (2011) Martes zibellina (Carnivora: Mustelidae). Mamm Species 43:75–86
  • Murakami T (2009) Martes zibellina (Linnaeus, 1758). In: Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T (eds) The wild mammals of Japan. Shokadoh, Kyoto, pp 196–197
  • Murakami T, Ohtaishi N (2000) Current distribution of the endemic sable and introduced Japanese marten in Hokkaido. Mamm Stud 25:149–152
  • Murakami T, Asano M, Ohtaishi N (2004) Mitochondrial DNA variation in the Japanese marten Martes melampus and Japanese sable Martes zibellina. Jpn J Vet Res 51:135–142
  • Nowak RM (1999) Walker’s mammals of the world, vol 2, 6th edn. The Johns Hopkins University Press, Baltimore
  • Nunome M, Ishimori C, Aplin KP, Tsuchiya K, Yonekawa H, Moriwaki K, Suzuki H (2010) Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice. Mol Ecol 19:2474–2489
  • Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53:793–808
  • Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817–818
  • Rissler LJ, Smith WH (2010) Mapping amphibian contact zones and phylogeographical break hotspots across the United States. Mol Ecol 19:5404–5416
  • Rozhnov VV, Meschersky IG, Pishchulina SL, Simakin LV (2010) Genetic analysis of sable (Martes zibellina) and pine marten (M. martes) populations in sympatric part of distribution area in the northern Urals. Russ J Genet 46:488–492
  • Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Hapbor
  • Sato JJ, Yasuda SP, Hosoda T (2009) Genetic diversity of the Japanese marten (Martes melampus) and its implications for the conservation unit. Zool Sci 26:457–466
  • Sato JJ, Hosoda T, Kryukov AP, Kartavtseva IV, Suzuki H (2011) Genetic diversity of the sable (Martes zibellina, Mustelidae) in Russian Far East and Hokkaido. Mamm Stud 36:209–222
  • Sato JJ, Wolsan M, Prevosti FJ, Delia G, Begg C, Begg K, Hosoda T, Campbell KL, Suzuki H (2012) Evolutionary and Biogeographic history of weasel-like carnivorans (Musteloidea). Mol Phylogenet Evol 63:745–757
  • Saitoh N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406–25
  • Small MP, Stone KD, Cook JA (2003) American marten (Martes americana) in the Pacific Northwest: population differentiation across a landscape fragmented in time and space. Mol Ecol 12:89–103
  • Soltis DE, Morris AB, McLachlan JS, Nanos PS, Soltis PS (2006) Comparative phylogeography of unglaciated eastern North America. Mol Ecol 15:4261–4293
  • Stephens M, Scheet P (2005) Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet 76:449–462
  • Stephens JC, Reich DE, Goldstein DB, Shin HD, Smith MW, Carrington M, Winkler C, Huttley GA, Allikmets R, Schriml L, Gerrard B, Malasky M, Ramos MD, Morlot S, Tzetis M, Oddoux C, di Giovine FS, Nasioulas G, Chandler D, Aseev M, Hanson M, Kalaydjieva L, Glavac D, Gasparini P, Kanavakis E, Claustres M, Kambouris M, Ostrer H, Duff G, Baranov V, Sibul H, Metspalu A, Goldman D, Martin N, Duffy D, Schmidtke J, Estivill Z, O’Brien SJ, Dean M (1998) Dating the origin of the CCR5-Δ32 AIDS-resistance allele by the coalescence of haplotypes. Am J Hum Genet 62:1507–1515
  • Stephens M, Smith N, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978–989
  • Sugimoto T, Miyoshi K, Sakata D, Nomoto K, Higashi S (2009) Fecal DNA-based discrimination between indigenous Martes zibellina and non-indigenous Martes melampus in Hokkaido, Japan. Mamm Stud 34:155–159
  • Suzuki H (2009) A molecular phylogenetic view of mammals in the “three-story museum” of Hokkaido, Honshu, and Ryukyu Islands, Japan. In: Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T (eds) The wild mammals of Japan. Shokadoh, Kyoto, pp 261–263
  • Swenson NG (2010) Mapping the suturing of a continental biota. Mol Ecol 19:5324–5327
  • Swenson NG, Howard DJ (2004) Do suture zones exist? Evolution 58:2391–2397
  • Swenson NG, Howard DJ (2005) Clustering of contact zones, hybrid zones, and phylogeographic breaks in North America. Am Nat 166:581–591
  • Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland
  • Wolsan M, Sato JJ (2010) Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora). Cladistics 26:168–194
  • Wozencraft WC (2005) Order Carnivora. In: Wilson DE, Reeder DM (eds) Mammal species of the world: a taxonomic and geographic reference, vol 1, 3rd edn. Johns Hopkins University Press, Baltimore, pp 532–628

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-d13627ac-31a2-4901-93a2-2b33d9ed79fa
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.