In silico search for drought-responsive genes in plants on the basis of scientific data: case study on poplar roots

• Autorzy: Kopecky D. , Matusikova I. , Sziderics A. H. , Trognitz F. , Spie N. , Stierschneider M. , Fluch S.
• Języki publikacji: EN

Abstrakty

EN

Despite of a number of studies on the genetic nature of plant adaptation to drought stress there is still no conclusion on the core mechanism of defense. Extraction of knowledge gained from experiments on different plant species under different conditions and subsequent interpolation thus appears to be a challenge. Here we applied a sequence similarity-based approach to identify computationally the components of defense against water deprivation. The prediction in silico was based on the available scientific data. We identified a subset of defense gene candidates, of which 2 % were experimentally proven to be drought-responsive. The transcriptomic analysis of drought-stressed poplar roots generated data that confirm and/or complement previous reports on plant responses to drought. On the other hand, we observed suppression of genes involved in antioxidative defense that seems to contradict many foregoing observations. The results, advantages and possible drawbacks of our prediction approach are discussed in light of experimental data.

• Wydawca: -
• Czasopismo: Acta Physiologiae Plantarum
• Rocznik: 2013
• Tom: 35
• Numer: 06
• Opis fizyczny: p.1955-1966,fig.,ref.

Twórcy

autor

Kopecky D.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

autor

Matusikova I.

• Institute of Plant Genetics and Biotechnology, SlovInstitute of Plant Genetics and Biotechnology, Slovak Academy of Sciences, P.O. Box 39A, 95007 Nitra, Slovak Republicak Academy of Sciences, P.O. Box 39A, 95007 Nitra, Slovak Republic

autor

Sziderics A. H.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

autor

Trognitz F.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

autor

Spie N.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

autor

Stierschneider M.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

autor

Fluch S.

• AIT Austrian Institute of Technology GmbH, Konrad-Lorenz Str. 24, 3430 Tulln, Austria

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