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2012 | 61 | 3 |

Tytuł artykułu

Phylogenetic analysis based on 16S rRNA gene of a thermophilic protease-secreting Bacillus gelatini-TPNK-3 isolate from Kiteezi Landfill, Uganda

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
A thermophilic protease-secreting bacterial isolate, TPNK-3, from Kiteezi landfill, is an aerobic Gram-positive spore-forming bacterium with rod-shaped cells (3.28 μm long and 0.45 μm wide). Optimal growth was observed at 55°C and pH of 7.0, and the isolate tolerates up to 5% (w/v) NaCl, exhibits extracellular amylolytic, cellulolytic and caseinolytic activities, utilizes a range of carbon and nitrogen sources and has a GC content of 45 mol%. The 16S rRNA gene sequence analysis showed that the studied bacterium belongs to the genus Bacillus, and closest to Bacillus gelatini (> 99.9%). Consequently, isolate TPNK3 is tentatively described as Bacillus gelatini strain TPNK3.

Wydawca

-

Rocznik

Tom

61

Numer

3

Opis fizyczny

p.227-231,fig.,ref.

Twórcy

autor
  • Department of Biochemistry, Makerere University, P.O.Box 7062, Kampala, Uganda
autor

Bibliografia

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  • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39: 783–791.
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  • Hawumba J.F., J. Theron and V.S. Brözel. 2001. Thermophilic protease-producing Geobacillus from Buranga hot springs in western Uganda. Curr. Microbiol. 45: 144–150.
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  • Ki J-S., W. Zhang and P.-W. Qian. 2009. Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification. J. Microbiol. Meth. 77: 48–57.
  • Liu Z., J. Luo, Q. Bai, M. Ma, G. Guan and H. Yin. 2005. Amplification of 16S rRNA genes of Anaplasma species in China for phylogenetic analysis. Vet. Microbiol. 107: 145–148.
  • Liu S., N. Zhu., L.Y. Li and H. Yuan. 2011. Isolation, identification and utilization of thermophilic strainsin aerobic digestion of sewage sludge. Water Research, 45: 5959–5968
  • Mei Y., Bingfang He, N. Liu and P. Ouyang. 2009. Screening and distributing features of bacteria with hydantoinase and carbamoylase. Microbiol. Res. 164: 322–329.
  • Nazina N.T., P.T. Tourova, B.A. Poltaraus, V.E. Novikova, A.A. Grigoryan, A.E. Ivanova, M.A. Lysenko, V.V. Petrunyaka, A.G. Ospov, S.S. Belyaev and V.M. Ivanov. 2001. Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. From petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaus- trophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustrophilus, G. ther-moglucosidasius and G. thermodenitrificans”. Int. J. Syst. Evol. Micr. 51: 433–446.
  • Nogales B., E.R.B. Moore, E. Llobet-Brossa, R . Rossello-Mora, R. Amann and K.N. Timmis. 2001. Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Appl. Environ. Microbiol. 67: 1874–1884.
  • Owen R.J. and L.R. Hill. 1979. The estimation of base compositions, base pairing and genome size of bacterial deoxyribonucleic acids pp. 277–296. In: Skinner F.A. and W. Lovelock D. (Ed), Identification Methods for Microbiologists, 2nd edn. Academic Press, London.
  • Saitou N. and M. Nei. 1987. The neighbor-joining method: A'new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406–425.
  • Siarkou I.V., E.M. Mylonakis, E. Bourtzi-Hatzopoulou and F.A. Koutinas. 2007. Sequence and phylogenetic analysis of the 16S rRNA gene of Ehrlichia canis strains in dogs with clinical monocytic ehrlichiosis. Vet. Microbiol. 125: 304–312.
  • Stackebrandt E. and B.M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44: 846–849.
  • Thompson J.D., D.G. Higgins and T. J. Gibson 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic. Acids Res. 22: 4673–4680.
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Typ dokumentu

Bibliografia

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