PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
1994 | 41 | 1 |

Tytuł artykułu

Interaction of higher plant ribosomal 5S RNAs with Xenopus laevis transcriptional factor IIIA

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
In this paper transcriptional factor IDA (TFIIIA) has been used as a probe for identity of three-dimensional-structure of eukaryotic 5S rRNAs. I was interested in finding a common motif in plant and Xenopus 5S rRNAs for TFIIIA recognition. I found that the two eukaryotic 5S rRNAs (from wheat germ and lupin seeds) are recognized by X. laevis TFIIIA and the data clearly suggest that these 5S rRNAs have very similar if not identical three-dimensional structures. Also effects of various conditions on stability of these complexes have been studied.

Wydawca

-

Rocznik

Tom

41

Numer

1

Opis fizyczny

p.17-24,fig.

Twórcy

  • Institute of Bioorganic Chemistry, ul.Z.Noskowskiego 12, 61-704 Poznan, Poland

Bibliografia

  • 1. Fairall, L., Rhodes, D. & Klug, A. (1986) Mapping of the sites of protection on 5S RNA gene by the Xenopus transcription factor IIIA. /. Mol. Biol. 192,577-591.
  • 2. Klug, A. & Rhodes, D. (1987) Zinc fingers: a novel protein motif for nucleic acid recognition. Trends Biochem. Sei. 12,464-469.
  • 3. Romaniuk, P.J., Leal de Stevenson, 1., Ehresmann, C., Romby, P. & Ehresmann, B. (1988) A comparison of the solution structures and conformational properties of the somatic and oocyte 5S rRNAs of Xenopus laevis. Nucl. Acids Res. 16,2295-2312.
  • 4. Romby, P., Baud in, F., Brunei/ C., Leal de Stevenson, I., Westhof, E., Romaniuk, P.J., Ehreshmann, C. & Ehresmann, B. (1990) Ribosomal 5S rRNA from Xenopus laevis: conformation and interaction with transcription factor HI A. Biochemie 72,437-452.
  • 5. You, Q., Veldhoen, N., Baudin, F. & Romaniuk, P. (1991) Mutations in 5S DNA and 5S RNA have different effects on the binding of Xenopus transcription factor IIIA. Biochemistry 30, 2495-2500.
  • 6. Baudin, F., Romaniuk, P.J.., Romby, P., Brunei, C., Westhof, E., Ehresmann, E. & Ehresmann, C. (1991) Involvement of hinge nucleotides of Xenopus laevis of 5S rRNA in RNA structural organisation and in thebindingofTFIIIA./. Mo/. Biol. 218,69-81.
  • 7. Joachimiak, A., Nalaskowska, M., Barcisze- wska, M., Mashkova, T.D. & Barciszewski, J. (1990) Higher plant 5S rRNAs share common secondary and tertiary structure. A new three dimensional model. Int. /. Biol. Macromol. 12, 321-327.
  • 8. Pelham, H.R.B. & Brown, D.D. (1980) A specific transcription factor that can bind either the 5S RNA gene or 5S RNA. Proc. Natl. Acad. Sei. U.S.A. 76,241-245.
  • 9. Guddat, U., Bakken, A.H. & Pieler, T. (1990) Protein-mediated nuclear export of RNA: 5S rRNA containing small RNP in Xenopus oocytes. Cell 60,619-628.
  • 10. Berg, J.M. (1988) Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins. Proc. Natl. Acad. Sei. U.S.A. 85,99-102.
  • 11. Engelke, D R. & Gottesfeld,J.M. (1990) Chromo­somal footprinting of transcriptionally active and inactive oocyte type 5S tRNA genes of X. laevis. Nucl. Acids Res. 18, 6031-6037.
  • 12. Fairall, L., Martin, S. & Rhodes, D. (1989) The DNA binding site of the Xenopus transcription factor IIIA has a non-B-form structure. EMBO }. 8,1809-1817.
  • 13. Miller, J., Mc Lachlan, A.D. & Klug, A. (1985) Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes. EMBO J. 4,1609-1614.
  • 14. Wolffc, A .P., Jordan, E. & Brown, D.D. (1986) A bacteriophage RNA polymerase transcribed through Xenopus 5S RNA gene transcription complex without it. Cell 44,381-389.
  • 15. Romaniuk, P.J. (1985) Characterisation of the RNA binding properties of transcription factor IIIA from Xenopus laevis oocytes. Nucl. Acids Res. 13,5369-5387.
  • 16. You, Q., Veldhoen, N., Baudin, F. & Romaniuk, P.J. (1991) Mutations in 5S DNA and 5S RNA have different effects on the binding of Xenopus transcription factor IIIA. Biodiemistry 30, 2495-2500.
  • 17. Honda, B. & Roeder, R. (1990) Association of a 5S rRNA gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation. Cell 22,114-126.
  • 18. Romaniuk, P.J. (1989) The role of highly conserved single stranded nucleotides of Xeno­pus 5S rRNA. Biochemistry 28,138&-1395.
  • 19. Westhof, E., Romby, P., Romaniuk, P.J., Ebel, J.P., Ehresmann, C. «Se Ehresmann, B. (1989) Computer modeling from solution data spinach chloro- plast and Xenopus laevis somatic and oocyte 5S rRNA. /. Mol. Biol. 207,417-431.
  • 20. Christiansen, J., Brown, R.S., Sproat, B.S. & Garrett, R.A. (1987) Xeitopus transcription factor IIIA binds primarily at functions between double helical stems and internal loops in oocyte 5S rRNA. EMBO J. 6,453-460.
  • 21. Pieler, T., Erdmann, V.A. & Appel, B. (1984) Structural requirements for the interaction of 5S rRNA with the eucaryotic factor IIIA. Nucl. Acids Res. 12,8393-8406.
  • 22. Andersen, J. & Delihas, N. (1986) Characterisation of RNA-protein interactions in 7S ribonucleo- protein particles from Xenopus laevis. J. Biol. Chem. 261,2912-2917.
  • 23. Barciszewska, M., Lorentz, S., Erdmann, V.A. & Barciszewski, J. (1990) Structural analysis of plant ribosomal 5S rRNAs. Visualisation of novel tertiary interactions by cleavage of lupin and wheat 5S rRNAs with RNase H. Biochim. Biophys. Acta 1087,68-72.
  • 24. Barciszewska, M., Huang, H.-W., Marshall, A.C., Erdmann, V.A. & Barciszewski, J. (1992) Biochemical and NMR spectroscopy evidence for a new tertiary A-U base pair in lupin ribosomal 5S RNA. J. Biol. Chem. 267, 16691-16695.
  • 25. Miller, J., Fairall, L. & Rhodes, D. (1989) A novel method for the purification of the Xenopus transcriptional factor IIIA. Nucl. Acids Res. 17, 9185-9182.
  • 26. Romaniuk, P.J., Leal de Stevenson, I. & Wong, A. (1987) Defining the binding site of Xenopus transcriptional factor IIIA on 5S RNA using truncated and chimeric 5S rRNA molecules. Nucl. Acids Res. 15,2737-2755.
  • 27. Bogenhagen, D.F. (1985) The intragenic control region of the Xenopus 5S rRNA gene contains two factor A binding domains that must be aligned properly for efficient transcription initiation. /. Biol. Chem. 260,6466-6471.
  • 28. Mashkova, T.D., Barciszewska, M., Joachimiak, A., Nalaskowska, M. & Barciszewski, J. (1990) Molecular evolution of plants as deduced from changes in free energy of 5S ribosomal RNAs. Int. /. Biol. Macromol. 12,247-250.
  • 29. Joachimiak, A., Basavappa, R., Barciszewska, M.Z., Nalaskowska, M. ¿c Barciszewski, J. (1990) Tertiary structure and modeling of plant ribosomal 5S RNA. Acta Biochim. Polon. 37, 359-375.
  • 30. Barciszewski, J., Bratek-Wiewiórowska, M.D., Górnicki, P., Naskret-Barciszewska, M., Wie- wiórowski, M., Zielenkiewicz, A. & Zielen- kiewicz, W. (1988) Comparative calorimetric studies on the dynamic conformation of plant 5S rRNAs. I. Thermal unfolding pattern of lupin seeds and wheat germ 5S rRNAs, also in presence of magnesium and sperminum cations. Nucl. Acids Res. 16,685-695.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-e9740f1c-a3a5-456f-a7e2-5526e8d2650a
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.