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2007 | 12 | 1 |

Tytuł artykułu

PRINS and C-PRINS: promising tools for the physical mapping of the lupin genome

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Two molecular cytogenetics methods, PRINS (primed in situ DNA labeling) and C-PRINS (cycling PRINS), were optimized for the physical mapping of several types of DNA sequences on the mitotic chromosomes of the narrow-leafed lupin (Lupinus angustifolius L.). The fragment of the FokI element from Vicia faba was localised by indirect PRINS reaction. Two other sequences, fragments of the coding sequences of L. luteus and of L. angustifolius, were localised by indirect C-PRINS. These techniques are faster and more sensitive than FISH, and they allowed the mapping of short DNA fragments. The data obtained shows that both types of PRINS are valuable tools for chromosome identification in lupin.

Wydawca

-

Rocznik

Tom

12

Numer

1

Opis fizyczny

p.16-24,fig.,ref.

Twórcy

autor
  • Polish Academy of Sciences, Strzeszynska 34, 60-479 Poznan, Poland
autor

Bibliografia

  • 1. Atkins, C.A., Smith, P.M.C., Gupta, S., Jones, M.G.K. and Caligari, P.D.S. Genetics, cytology and biotechnology. In: Lupins as crop plants: biology, production and utilization (Gladstones J.S., Atkins C.A., Hamblin J., Eds). CAB International (1998) 67-92.
  • 2. Naganowska, B. and Ładoń, D. Chromosomes of Lupinus hispanicus subsp. hispanicus Boiss. et Reut., L. luteus L. and their hybrids. J. Appl. Genet. 41 (2000) 167-170.
  • 3. Naganowska, B. and Zielińska, A. Physical mapping of 18S-25S rDNA and 5S rDNA in Lupinus via fluorescent in situ hybridization. Cell. Mol. Biol. Lett. 7 (2002) 665-670.
  • 4. Naganowska, B., Doležel, J. and Święcicki, W.K. Development of molecular cytogenetics and physical mapping of ribosomal genes in Lupinus. Biol. Plant. 46 (2003) 211-215.
  • 5. Naganowska, B. and Kaczmarek, A. Localisation of rDNA in the Lupinus genome during the cell cycle. J. Appl. Genet. 45 (2004) 189-193.
  • 6. Hajdera, I., Siwinska, D., Hasterok, R. and Maluszynska, J. Molecular cytogenetic analysis of genome structure in Lupinus angustifolius and Lupinus cosentinii. Theor. Appl. Genet. 107 (2003) 988-996.
  • 7. Schwarzacher, T., Leicht, A.R. and Heslop-Harrison J.S. DNA:DNA in situ hybridization – methods for light microscopy. Plant Cell Biology: A Practical Approach. (Harris, N., Oparka, K.J. Eds.) Oxford, Oxford University Press (1994) 1-20.
  • 8. Koch, J.E., Kolvraa, S., Petersen, K.B., Gregersen, N. and Bolund, L. Oligonucleotide-priming methods for the chromosome-specific labelling of α satellite DNA in situ. Chromosoma 98 (1989) 259-265.
  • 9. Gosden, J., Hanratty, D., Starling, J., Fantes, J., Mitchell, A. and Porteous, D. Oligonucleotide primed in situ DNA synthesis (PRINS): a method for mapping, banding and investigation of sequence organization. Cytogenet. Cell Genet. 57 (1991) 100-104.
  • 10. Gosden, J.R Identification and quantitation of human chromosomes by primed in situ synthesis. Chromosome Res. 4 (1996) 331-334.
  • 11. Pallestor, F., Quennesson, I., Coignet, L., Girardet, A., AndrJo, B. and Charlieu, J.P. Direct detection of disomy in human sperm by the PRINS technique. Human Genet. 97 (1996) 21-25.
  • 12. Abbo, S, Miller, T.E. and King, I.P. Primed-induced in situ hybridization to plant chromosomes. Genome 36 (1993) 815-817.
  • 13. Mukai, Y. and Appels, R. Direct chromosome mapping of plant genes by in situ polymerase chain reaction (in situ PCR). Chromosome Res. 4 (1996) 401-403.
  • 14. Menke, M., Fuchs, J. and Schubert, I. A comparison of sequence resolution on plant chromosomes: PRINS versus FISH. Theor. Appl. Genet. 97 (1998) 1314-1320.
  • 15. Kubaláková, M., Macas, J. and Doležel, J. Mapping of repeated DNA sequences in plant chromosomes by PRINS and C-PRINS. Theor. Appl. Genet. 94 (1997) 758-763.
  • 16. Kubaláková, M., Vrána, J., Číhalíková, J., Lysák and Doležel, J. Localization of DNA sequences on plant chromosomes using PRINS and CPRINS. Methods Cell Sci. 23 (2001) 71-82.
  • 17. Doležel, J., Číhalíková, J., Weiserová, J. and Lucretti, S. Cell cycle synchronization in plant root meristems. Methods Cell Sci. 21 (1999) 95-107.
  • 18. Nuc, P and Wypijewski, K. EST and cDNA collection from the yellow lupin hypocotyl. http://www.staff.amu.edu.pl/~ibmib/zbiochemii.
  • 19. You, M., Boersma, J.G., Buirchell, B.J. Sweetingham, M.W., Siddique, K.H.M. and Yang, H. A PCR-based molecular marker applicable for marker-assisted selection for anthracnose disease resistance in lupin breeding. Cell. Mol. Biol. Lett. 10 (2005) 123-134.
  • 20. Kato, A., Yakura, K. and Tanifuji, S. Sequence analysis of Vicia faba repeated DNA, the FokI repeat element. Nucleic Acids Res. 12 (1984) 6415-6426.
  • 21. Kasprzak, A., Šafář, J., Janda, J., Doležel, J., Wolko, B. and Naganowska, B. The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.). Cell. Mol. Biol. Lett. 11 (2006) 396-407.
  • 22. Boersma, J.G., Pallotta, M., Li, Ch., Buirchell, B.J., Sivasithamparam, K. and Yang, H. Construction of a genetic linkage map using mflp and identification of molecular markers linked to domestication genes in narrowleafed lupin (Lupinus angustifolius L.). Cell. Mol. Biol. Lett. 10 (2005) 331-344.
  • 23. Nelson, M.W., Phan, H.T.T., Ellwood, S.R., Moolhuijzen, P.M., Hane, J., Williams, A., O’Lone, C.E., Fosu-Nyarko, J., Scobie, M., Cakir, M., Jones, M.G.K., Bellgard, M., Książkiewicz, M., Wolko, B., Barker, S.J., Oliver, R.P. and Cowling, W.A. The first gene-based map of Lupinus angustifolius L. – location of domestication genes and conserved synteny with Medicago truncatula. Theor. Appl. Genet. (2006) DOI 10.1007/s00122-006-0288-0.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-afe2c187-3e7d-4325-8a90-3b41614a919c
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