Full length genome sequence of Polish isolate of Beet soil-borne virus confirms low level of genetic diversity

• Autorzy: Borodynko N. , Hasiow-Jaroszewska B. , Rymelska N. , Pospieszny H.
• Języki publikacji: EN

Abstrakty

EN

 The complete nucleotide sequence of a Polish isolate of Beet soil-borne virus was determined for the first time. The genome organization was identical with those previously established for isolates from Germany and China. A comparison of the Polish isolate with others deposited in GenBank reveled high level of nucleotide identity, about 98-100%, throughout the genome analyzed. The ratio between non-synonymous and synonymous substitutions was rather low suggesting a negative selective pressure. The non-synonymous mutations were particulary frequent in triple gene block.

Słowa kluczowe

EN

Polymyxa betae; isolation; Poland; beet soil-borne virus; sugar-beet; determination; genetic diversity; genome sequence; genome organization; Polish isolate

• Wydawca: -
• Czasopismo: Acta Biochimica Polonica
• Rocznik: 2009
• Tom: 56
• Numer: 4
• Opis fizyczny: p.729-731,ref.

Twórcy

autor

Borodynko N.

• Institute of Plant Protection - National Research Institute, Wegorka 20, 60-318 Poznan, Poland

autor

Hasiow-Jaroszewska B.

autor

Rymelska N.

autor

Pospieszny H.

Bibliografia

• Ali A, Schneider WL, Sherman DJ, Gray S, Smith D, Roosinck MJ (2006) Analysis of genetic bottlenecks during horizontal transmission of cucumber mosaic virus. J Virol 80: 8345-8350. 
• Borodynko N, Pospieszny H (2007) Identyfikacja i występowanie odglebowych wirusów buraka cukrowego w Polsce. Prog Plant Prot 47: 55-61 (in Polish).
• Borodynko N, Hasiów B, Pospieszny H (2006) First Report of Beet soilborne virus in Poland. Plant Dis 90: 112.
• Borodynko N, Rymelska N, Hasiów-Jaroszewska B, Pospieszny H (2009) Molecular characterization of three soil-borne sugar beet-infecting viruses based on the coat protein gene. J Plant Pathol 91: 189-191.
• Farzadfar SH, Pourrahim R, Golnaraghi AR, Shahraeen N (2002) First report of Beet soil-borne virus on sugar beet in Iran. Plant Dis 86: 187.
• French R, Stenger DC (2003) Evolution of Wheat streak mosaic virus: dynamics of population growth within plants may explain limited variation. Annu Rev Phytopathol 41: 199-214. 
• Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
• Ivanović M, Macfarlane I (1982) A tubular virus associated with infection of sugar beet by Polymyxa betae. Report of Rothamsted Experimental Station for 1981, pp 190-191.
• Janssen D, Velasco L, Martin G, Segundo E, Cuadrado IM (2007) Low genetic diversity among Cucumber vein yellowing virus isolates from Spain. Virus Genes 34: 367-371. 
• Koenig R, Loss S (1997) Beet soil-borne virus RNA1: genetic analysis enabled by a starting sequence generated with primers to highly conserved helicase-encoding domains. J Gen Virol 78: 3161-3165. 
• Koenig R, Beier C, Commandeur U, Luth U, Kaufmann A, Luddecke P (1996) Beet soil-borne virus RNA 3 - a further example for the heterogeneity of the gene content of furovirus genomes and of triple gene block-carrying RNAs. Virology 216: 202-207. 
• Koenig R, Commandeur U, Loss S, Beier C, Kaufmann A, Lesemann DE (1997) Beet soil-borne virus RNA 2: similarities and dissimilarities to the coat protein gene-carrying RNAs of other furoviruses. J Gen Virol 78: 469-477. 
• Meunier A, Schmit JF, Stas A, Kutluk N, Bragard C (2003) Multiplex reverse transcription-PCR for simultaneous detection of Beet necrotic yellow vein virus, beet soilborne virus, and Beet virus Q and their vector Polymyxa betae Keskin on sugar beet. Appl Environ Microbiol 69: 2356-2360. 
• Mouhanna AM, Nasrallah A, Langen G, Schlösser E (2002) Surveys for Beet Necrotic Yellow Vein Virus (the cause of Rhizomania), other viruses, and soil-borne fungi infecting sugar beet in Syria. J Phytopathol 150: 657-662.
• Schneider WL, Roossinck MJ (2001) Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions. J Virol 75: 6566-6571. 
• Wang B, Li M, Zhang JJ, Han CG, Li DW, Yu JL (2007) First report of Beet soil-borne virus on sugar beet in China. Plant Pathol 57: 389.
• Wang B, Li M, Han C, Li D, Yu JL (2008) Complete genome sequence of two Chinese Beet soil-borne virus isolates provide evidence that the genome is highly conserved. J Phytopathol 156: 487-488