PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
1997 | 44 | 3 |

Tytuł artykułu

Why a benign mutation kills enzyme activity. Structure-based analysis of the A176V mutant of Saccharomyces cerevisiae L-asparaginase I

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
A conservative and apparently harmless AI76V mutation in intracellular S. cerevisiae L-asparaginase (ScerAI) completely abolishes the enzyme activity. Sequence and structural comparisons with type II bacterial L-asparaginases show that the mutated residue is in a very conservative region and plays a vital role in the cohesion of functional tetramers of these enzymes through participation in side-chain...main-chain (Ser) Oy...O (Ala) hydrogen bonds across the tetramer interface. The fact that bacterial L-asparaginases of type I show less conservation in this region suggests that they may have different quaternary structure while adopting the subunit fold and intimate dimer architecture of type II enzymes. A comparison of all available sequences of microbial L- asparaginases confirms that separate intra- and extra-cellular enzymes evolved in prokaryotes and eukaryotes independently. However, an analysis of the available complete genome sequences reveals a surprising fact that Haemophi­lus influenzae possesses only a type II asparaginase while the archaebacterium Methanococcus jannaschii has a type I gene, but not a type II.

Wydawca

-

Rocznik

Tom

44

Numer

3

Opis fizyczny

p.491-504,fig.

Twórcy

  • University of Edinburgh, Edinburgh, EH4 2XU, U.K.
autor

Bibliografia

  • Aiba, H., Baba, T., Fujita, K., Hayashi, K., Inada, T., Isono, K., Itoh, T., Kasai, H., Hashimoto, K, Kimura, S., Kitakawa, M., Kitagawa, M., Makino, K, Miki, T., Mizobuchi, K., Mori, H., Mori, T., Motomura. K, Nakadc, S., Naka- mura, Y., Nashimoto, H., Nishio, Y., Oshima, T., Saito, N., Sampei, G., Seki, Y., Sivasun- daram, S., Tagami, H.,.Takeda, J., Takeraoto, K., Takeuchi, Y., Wada, C., Yamamoto, Y. & Horiuchi, T. (1996) A 570-kb DNA sequence of the Escherichia coli K-12 genome corre­sponding to the 28.0-40.1 min region on the linkage map. DNA Res. 3, 363-377.
  • Bonthron, D.T. (1990) L-Asparaginase II of Es­cherichia coli K-12. Cloning, mapping and sequencing of the ansB gene. Gene 91, 101-105.
  • Bult, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton. G.G., Blake, J.A., FitzGerald, L.M., Clayton, R.A., Gocayne, J.D. et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococ- cus jannaschii. Science 273, 105&-1073.
  • Devereux, J., Haeberli, P. & Smithies, O. (1984) A comprehensive set of sequence analysis pro­grams for the VAX. Nucleic Acids Res. 12, 387-395.
  • van-Dyl, J.M., de-Jong, A., Smith, H.. Bron, S. & Venema, G. (1991) Lack of specific hybridiza­tion between the lep genes of Salmonella typhimurium and Bacillus licheniformis. FEMS Microbiol. Lett. 65, 345-351.
  • Dunlop, P.C., Meyer, G.M., Ban. D. & Roon, R.J. (1978) Characterization of two forms of asparaginase in Saccharomyces cerevisiae. J. Biol. Chem. 253, 1297-1304.
  • Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavagc, A.R., Bult, C.J., Tomb, J.F., Dougherty, B.A., Merrick, J.M. et al. (1995) Whole-genome ran­dom sequencing and assembly of Haemophi­lus influenzae Rd. Science 269, 496-512.
  • Gallagher, M.P., Marshall, R.D. & Wilson, R. (1989) Asparaginase as a drug for treatment of acute lymphoblastic leukaemia. Essays Biochem. 24, 1-40.
  • Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M. et al. (1996) Life with 6000 genes. Science 274, 546, 563-7.
  • Jakob, C.G., Lewinski, K., LaCount, M.W., Roberts, J. & Lebioda, L. (1997) Ion binding induces closed conformation in Pseudomonas 7 A glutaminase-asparaginase (pga): Crystal structure of the PGA-SO^'-NH^ complex at 1.7 A resolution. Biochemistry 36, 923-931.
  • Jeffrey, G.A. & Saenger, W. (1991) Hydrogen Bonding in Biological Macromolecules. Sprin­ger« Verlag, Berlin.
  • Jerlstroem, P.G., Bezjak, D.A., Jennings, M.P. & Beacham, I.R. (1989) Structure and expres­sion in Escherichia coli K-12 of the ^asparagi­nase I-encoding ansA gene and its flanking regions. Gene 78. 37-46.
  • Jones, T.A. & Kjeldgaard, M. (1994) O — The Manual. Uppsala University, Uppsala, Swe­den.
  • Kim, K-W., Kamerud, J.Q., Livingston, D.M. & Roon, R.J. (1988) Asparaginase II of Sac­charomyces cerevisiae. Characterization of the ASP3 gene. J. Biol. Chem. 263, 11948- -11953.
  • Lubkowski, J., Wlodawer, A., Ammon, H.L., Copeland, T.I}. & Swain, A.L. (1994a) Struc­tural characterization of Pseudomonas 7 A glutaminase-asparaginase. Biochemistry 33, 10257-10265.
  • Lubkowski, J., Wlodawer, A., Housset, D., Weber, I.T., Ammon, H.L., Murphy, K.C. & Swain, A.L. (1994b) Refined crystal structure of Ac- inetobacter glutaminasificans glutaminase- asparaginase. Acta Crystallogr. D50, 826- -832.
  • Lubkowski, J., Palm, G.J., Gilliland, G.L., Derst, Ch., Roehm, K.-H. & Wlodawer, A. (1996) Crystal structure and amino acid sequence of Wolinella succinogenes L-asparaginase. Eur. J. Biochem. 241, 201-207.
  • Miller, M., Rao, J.K.M., Wlodawer, A. & Gribskov, M. (1993) A left-handed crossover involved in amidohydrolase catalysis. Crystal structure of jErwinia chrysanthemi L-asparaginase with bound L-aspartate. FEBS Lett. 328, 275-279.
  • Minton, N.P., Bullman, H.M.S., Scawen, M.D., Atkinson, T. & Gilbert, H.J. (1986) Nucleotide sequence of the Erwinia chrysanthemi NCPPB 1066 L-asparaginase gene. Gene 46, 25-35.
  • Palm, G.J., Lubkowski, J., Derst, Ch., Schleper, S., Roehm, K.-H. & Wlodawer, A. (1996) A covalently bound catalytic intermediate in Es­cherichia coli asparaginase: Crystal structure of a Thr-89-Val mutant. FEBS Lett. 390, 211-216.
  • Satow, Y.; Cohen, G.H., Padlan, E.A. & Davies, D.R. (1986) Phosphocholine binding immuno­globulin Fab McPC603: An X-ray diffraction study at 2.7 A. J. Mol. Biol. 190. 593-604.
  • Sinclair, K., Warner, J.P. & Bonthron, D.T. (1994) The ASPl gene of Saccharomyces cerevisiae, encoding the intracellular isozyme of L- asparaginase. Gene 144, 37—43.
  • Sun, D.X. & Setlow, P. (1991) Cloning, nucleotide sequence, and expression of the Bacillus sub- tilis ans operon, which codes for L-asparagi­nase and L-aspartase. J. Bacteriol. 173,3831- -3845.
  • Swain, A.L., Jaskólski, M., Housset, D., Rao, M.J.K. & Włodawer, A. (1993) Crystal struc­ture of Escherichia coli L-asparaginase, an enzyme used in cancer therapy. Proc. Natl. Acad. Sci. U.S.A. 90, 1474-1478.
  • Tanaka, S., Robinson, E.A., Appella, E., Miller, M., Ammon, H.L., Roberts, J.f Weber, I.T. & Włodawer, A. (1988) Structures of amidohy- drolases. Amino-acid sequence of a glutami­nase-asparaginase from Acinetobacter gluta­minasificans and preliminary crystal- lographic data for an asparaginase from Er­winia. chrysanthemi. J. Biol. Chem. 263, 8583-8591.
  • Wells, A.F. (1990) Structural Inorganic Chemis­try. Oxford University Press.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-723b2059-2e1c-4d94-8204-ace1975ff385
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.