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1995 | 42 | 4 |

Tytuł artykułu

Structural aspects of the inhibition and catalytic mechanism of thymidylate synthase

Autorzy

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Thymidylate synthase (TS) is a target for anticancer drugs, due to its unique role in the biosynthesis of an essential DNA precursor. The X-ray structures available for several bacterial enzymes have been used to design novel inhibitors of TS, to structurally analyze the binding mode of existing inhibitors, and to propose catalytic roles for amino-acid residues on the protein. The first part of this paper describes some aspects of structure-based drug design, including a recent result from the groups of Montfort and Maley emphasizing the importance of conformational changes in inhibitor binding. The second part of the paper describes the work of the author on the TS mechanism, especially the catalytic roles of active site amino acids Asnl77 and Glu58 in TS from Escherichia coli. An important function for Glu58 is proposed to be preventing the excessive stabilization of a covalent intermediate. The use of isotope effects to probe the mechanistic basis for stimulation of E. coli TS by magnesium ions, and to identify differences between the E. coli and human enzymes, is described. The hypothesis that N5 of tetrahydrofolate provides the basicity for deprotonation of the nucleotide is also discussed.

Wydawca

-

Rocznik

Tom

42

Numer

4

Opis fizyczny

p.367-380,fig.

Twórcy

autor
  • University of Massachusetts Medical Center, Biotech 2, 373 Plantation Street, Worcester, MA 01605, U.S.A.

Bibliografia

  • 1. Hardy, L.W., Finer-Moore, J.S., Montfort, W.R., Jones, M.O., Santi, D.V. & Stroud, R.M. (1987) Atomic structure of thymidylate synthase: target for rational drug design. Science 235, 448-455.
  • 2. Montfort, W.R., Perry, K.M., Fauman, E.B., Finer-Moore, J.S., Maley, G.F., Hardy, L., Maley, F. & Stroud, R.M. (1990) Structure, multiple site binding and segmental accommodation in thymidylate synthase on binding dUMP and an anti-folate. Biochemistry 29, 6964-6977.
  • 3. Matthews, D.A., Appelt, K„ Oatley, S.J. & Xuong, Ng, H. (1990) Crystal structure of Escher­ichia coli thymidylate synthase containing bound 5-fluoro-2'-deoxyuridylate and 10-pro- pargyl-5,8-dideazafolate. }. Mol. Biol. 214, 923-936.
  • 4. Finer-Moore, J.S., Montfort, W.R. & Stroud, R.M. (1990) Pairwise specificity and sequential bin­ding in enzyme catalysis: thymidylate synthase. Biochemistry 29, 6977-6986.
  • 5. Matthews, D.A., Villafranca, J.E., Janson, C.A., Smith, W.W„ Welsh, K. & Freer, S. (1990) Stereo­chemical mechanism of action for thymidylate synthase based on the X-ray structure of the covalent inhibitory complex with 5-fIuoro-2'- -deoxyuridylate and 5,10-methylenetetra- hydrofolate. J. Mol. Biol. 214, 937-948.
  • 6. Weichsel, A., Montfort, W.R., Cieśla, J. & Maley, F. (1995) Promotion of purine nucleotide bin­ding to thymidylate synthase by a potent folate analogue inhibitor, 1843U89. Proc. Natl. Acad. Sci. U.S.A. 92,3493-3497.
  • 7. Carreras, C.W. & Santi, D.V. (1995) The catalytic mechanism and structure of thymidylate syn­thase. Annu. Rev. Biochem. 64, 721-762.
  • 8. Perry, K.M., Fauman, E.B., Finer-Moore, J.S., Montfort, W.R., Maley, G.F., Maley, F. & Stroud, R.M. (1990) Plastic adaptation toward muta­tions in proteins: structural comparison of thy­midylate synthases. Proteins: Structure, Function & Genetics 8,315-333.
  • 9. Kamb, A., Finer-Moore, J.S. & Stroud, R.M. (1992) Cofactor triggers the conformational change in thymidylate synthase: implications for an ordered binding mechanism. Biochemistry 31,12876-12884.
  • 10. Fauman, E.B., Rutenber, E.E., Maley, G.F., Maley, F. & Stroud, R.M. (1994) Water-mediated substrate/product discrimination: the product complex of thymidylate synthase at 1.83 A. Biochemistry 33,1502-1511.
  • 11. Finer-Moore, J., Fauman, E.B., Foster, P.G., Perry, K.M., Santi, D.V. & Stroud, R.M. (1993) Refined structures of substrate-bound and phosphate- -bound thymidylate synthase from Lactobacillus casei. J. Mol. Biol. 232,1101-1116.
  • 12. Perry, K.M., Carreras, C.W., Chang, L.C., Santi, D.V. & Stroud, R.M. (1993) Structures of thymidylate synthase with a C-terminal dele­tion: role of the C-terminus in alignment of 2'- -deoxyuridine 5'-monophosphate and 5,10-me- thylenetetrahydrofolate. Biochemistry 32, 7116-7125.
  • 13. Finer-Moore, J.S., Maley, G.F., Maley, F., Mont­fort, W.R. & Stroud, R.M. (1994) Crystal struc­ture of thymidylate synthase from T4 phage: component of a deoxynucleoside triphosphate -synthesizing complex. Biochemistry 33, 15459- -15468.
  • 14. Schiffer, C.A., Davisson, V.J., Santi, D.V. & Stroud, R.M. (1991) Crystallization of human thymidylate synthase. J. Mol. Biol. 219,161-163.
  • 15. McElroy, H.E., Sisson, G.W., Schoettlin, W.E., Aust, R.M. & Villa fra nee, J.E. (1992) Studies on engineering crystallizability by mutation of sur­face residues of human thymidylate synthase. /. Crystal Growth 122,265-272.
  • 16. Appelt, K., Bacquet, R.J., Bartlett, C.A., Booth, C.L., Freer, S.T., Fuhry, M.A.M., Gehring, M.R., Herrmann, S.M., Howland, E.F., Janson, C.A., Jones, T.R., Kan, C.-C., Kathardekar, V., Lewis, K.K., Marzoni, G.P., Matthews, D.A., Mohr, C., Moomaw, E.W., Morse, A.A., Oatley, S.J., Og- den, R.C., Reddy, M.R., Reich, S.H., Schoettlin, W.S., Smith, W.W., Varney, M.D., Villafranca, J.E., Ward, R. W„ Webber, S., Webber, S.E., Welsh, K.M. & White, J. (1991) Design of enzyme inhi­bitors using iterative protein crystallographic analysis. }. Med. Chem. 34,1925-1934.
  • 17. Duch, D.S., Banks, S., Dev, I.K., Dickerson, S.H., Ferone, R., Heath, L.S., Humphreys, J., Knick, V., Pendergast, W., Singer, S., Smith, G.K., Waters, K. & Wilson, H.R. (1993) Biochemical and cellular pharmacology of 1843U89, a novel benzoquinazoline inhibitor of thymidylate synthase. Cancer Res. 53, 810-818.
  • 18. Clarke, S.J., Jackman, A.L. & Judson, I.R. (1993) The history of the development and clinical use of CB3717 and ICI D1694. Adv. Exp. Med. Biol. 339, 277-290.
  • 19. Hardy, L.W. & Nalivaika, E. (1992) Aspara- ginel77 in Escherichia coli thymidylate synthase is a major determinant of substrate specificity. Proc. Natl. Acad. Sci. U.S.A. 89,9725-9729.
  • 20. Graves, K.G., Butler, M.M. & Hardy, L.W. (1992) Roles of Cysl48 and Aspl79 in catalysis by dCMP hydroxymethylase from bacteriophage T4 examined by site-directed mutagenesis. Biochemistry 31,10315-10321.
  • 21. Klimasaukas, S., Kumar, S., Roberts, R.J. & Cheng, X. (1994) Hhal Methyltransferase flips its target base out of the DNA helix. Cell 76, 357-369.
  • 22. Reinisch, K.M., Chen, L., Verdine, G.L. & Lipscomb, W.N. (1995) The crystal structure of Hae\\\ methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell 82,143-153.
  • 23. Maley, G.F., Maley, F. & Baugh, C.M. (1979) Dif­ferential inhibition of host and viral thymidylate synthetases by folylpolyglutamates. }. Biol. Chem. 254, 7485-7487.
  • 24. Appleman, J.R., Villafranca, J.E., Matthews, D.A. & Blakley, R.L. (1988) Rapid kinetic studies of the catalytic mechanism of thymidylate synthase from Escherichia coli. FASEB /. 4, A2301.
  • 25. Hardy, L.W., Graves, K.L. & Nalivaika, E. (1995) Electrostatic guidance of catalysis by a con­served glutamic acid in Escherichia coli dTMP synthase and bacteriophage T4 dCMP hydroxy­methylase. Biochemistry 34, 8422-8432.
  • 26. Huang, W. & Santi, D.V. (1994) Isolation of a covalent steady-state-intermediate in glutamate 60 mutants of thymidylate synthase. }. Biol. Chem. 269,31327-31329.
  • 27. Benkovic, S.J. (1978) On the mechanisms of fola­te cofactors. Acc. Chem. Res. 11,314^-320.
  • 28. Kallen, R.G. & Jencks, W.P. (1966). The mecha­nism of the condensation of formaldehyde with tetrahydrofolic acid. J. Biol. Chem. 241, 5851- -5863.
  • 29. Eldin, S. & Jencks, W.P. (1995) Lifetimes of iminium ions in aqueous solution. J. Am. Chem. Soc. 117, 4851-4857.
  • 30. Dev, I.K., Yates, B.B., Atashi, J. & Dallas, W.S. (1989) Catalytic role of histidine 147 in Esche­richia coli thymidylate synthase. ]. Biol. Chem. 264,19132-19137.
  • 31. Slieker, L.J. & Benkovic, S.J. (1984) Synthesis of (6R,11S)- and (6R,llR)-5,10-methylene[ll- ^H^HItetrahydrofolate. Stereochemical paths of serine hydroxymethyltransferase, 5,1-methy- lenetetrahydrofolate dehydrogenase and thy­midylate synthetase catalysis. J. Am. Chem. Soc. 106,1833-1838.
  • 32. DeGraw, J.I., Colwell, W.T., Brown, V.H., Sato, M., Kisliuk, R.L., Gaumont, Y., Thorndike, J. & Sirotnak, F.M. (1988) Synthesis and biological evaluation of 8-deazahomofolic acid and its tetrahydroderivative./. Med. Chem. 31,150-153.
  • 33. Butler, M.M., Graves, K.L. & Hardy, L.W. (1994) Evidence from lsO exchange studies for an exocyclic methylene intermediate in catalysis by T4 dCMP hydroxymethylase. Biochemistry 33, 10521-10526.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-3327b19f-a374-495e-b238-5be221ebacef
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