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2006 | 52 | 4 |

Tytuł artykułu

Roznicowanie izolatow Malassezia pachydermatis metoda RAPD

Treść / Zawartość

Warianty tytułu

EN
RAPD differentiation of yeast like fungi Malassezia pachydermatis

Języki publikacji

PL

Abstrakty

EN
The aim of the work was analyzing of genomic DNA of Malassezia pachydermatis isolates from clinical cases otitis externa from dogs using RAPD method with arbitrary primers Eric1R, Eric2, BG2 and FM1. Materials and methods. 47 strains of M. pachydermatis isolates from clinical cases otitis externa from dogs were tested. Isolation of genomic DNA was provided according with MasterPureTM Yeast DNA Purification Kit EPICENTRE procedure. The quality of isolated genomic DNA was determined electrophoreticaly. For differentiation the following primers were used: Eric1R, Eric2, BG2 and FM1. Primers Eric 1R and Eric 2 were used together in one reaction or amplificated separately. Obtained products were analyzed electrophoreticaly in 1.5% agarose gel. For determination of phylogenic tree Quantity one VersaDoc (BioRad) and Statgraphics plus 4.1 programs were used. Results. High degree of heterogeneity of DNA among investigated isolates of M. pachydermatis was shown using FM1 primer. Dendrograms were prepared by calculation euclid's distance of different parameters (size and count of RAPD products) by nearest neighbor method. Basing on phylogenic tree four main types (phylogenic groups) of M. pachydermatis isolates were shown. The other five groups non-count was shown also.

Wydawca

-

Rocznik

Tom

52

Numer

4

Opis fizyczny

s.299-304,rys.,bibliogr.

Twórcy

autor
  • Szkola Glowna Gospodarstwa Wiejskiego, ul.Ciszewskiego 8, 02-786 Warszawa

Bibliografia

  • [1] Dworecka-Kaszak B. 2000. Zakażenia Malassezia pachydermatis u psów i kotów. Magazyn Weterynaryjny, Suplement „Koty”: 36-39.
  • [2] Nakabayashi A., Sie Y., Guillot J. 2000. Identyfication of Malassezia species isolated from patients with seborrhoeic dermatitis, atopic dermatitis, pityriasis versicolor and normal subjects. Medical Mycology 38: 337-341.
  • [3] Gupta A., Kohli Y., Summerbell R. 2000. Molecular differentiation of seven Malassezia species. Journal of Clinical Microbiology 38: 1869-1875.
  • [4] Sugita T., Takashima M., Kodama M., Tsuboi R., Nishikawa A. 2003. Description of a new yeast species, Malassezia japonica, and its detection in patients with atopic dermatitis and healthy subjects. Journal of Clinical Microbiology 41: 4695-4699.
  • [5] Aizawa T., Kano R., Nakamura Y., Watanabe S., Hasegawa A. 2001. The genetic diversity of clinical isolates of Malassezia pachydermatis from dogs and cats. Medical Mycology 39: 329-334.
  • [6] Guillot J., Gueho E. 1995. The diversity of Malassezia yeasts confirmed by rRNA sequence and nuclear DNA comparisons. Antonie van Leeuwenhoek 67: 297-314.
  • [7] Kiuchi A., Takaraguchi S., Hanizawa R., Hara M., Ikeda T., Tabuci K. 1992. Chromosome sized DNA of Malassezia pachydermatis by pulsed- field gel electrophoresis. Journal of Medical Veterinary Sciences 54: 1219-1220.
  • [8] Boekhout T., Kamp M., Gueho E. 1998. Molecular ty ping of Malassezia species with PFGE and RAPD. Medical Mycology 36: 365-372.
  • [9] Boekhout T., Bosboom R.W. 1994. Kariotyping of Malassezia yeast: taxonomic and epidemiological implications. Systematic and Applied Microbiology 17: 146-153.
  • [10] Anthony R.M., Howell S.A., Pinters L. 1994. Application of DNAtyping methods to the study of the epidemiology of Malassezia pachydermatis. Microbial Ecology in Health and Diseases 7: 161-168.
  • [11] Senczek D., Siesenop U., Bohm K.H. 1999. Characterization of Malassezia species by means of phenotypic characteristics and detection of electrophoretic karyotypes by pulsed-field gel electrophoresis. Mycoses 42: 409-414.
  • [12] Theelen B., Silvestri M., Gueno E., Belkum A., Boekhout T. 2001. Identification and typing of Malassezia yeasts using amplified fragment length polimorphism (AFLP(tm)), random amplified polymorphic DNA (RAPD) and denaturing gradient gel electrophoresis (DGGE). FEMS Yeast Research 1: 79-86.
  • [13] Gzyl A., Augustynowicz E. 1999. Technical Aspects of Random Amplifield Polymorphic DNA (RAPD) technique in genotyping of bacterial strains. Acta Microbiologica Polonica 3: 243-259.
  • [14] Belkum A. 1994. DNA fingerpriting of medically important microorganisms by use of PCR. Clinical Microbiology Reviews 7: 174-184.
  • [15] Welsh J., McClelland M. 1990. Fingerpriting genomes using PCR with arbitrary primers. Nucleic Acids Research 18: 7213-7218.
  • [16] Guillot J., Gueho E., Chevrier G., Chermette R. 1997. Epidemiological analysis of Malassezia pachydermatis isolates by partial sequencing of the large subunit ribosomal RNA. Research in Veterinary Science 62: 22-25.
  • [17] Belkum A., Boekhout T., Bosboom R. 1994. Monitoring spread of Malassezia infections in a neonatal intensive care unit by PCR-mediated genetic typing. Journal of Clinical Microbiology 32: 2528-2532.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-26155d82-2d80-460c-a1ed-6a0f833ea195
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