PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
2019 | 41 | 06 |

Tytuł artykułu

Chromatin architecture and DNA methylation-associated epigenetic changes in ethephon-primed sprouts of soybean [Glycine max (L.) Merrill]

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The simplest structure phytohormone ethylene (C₂H₄) regulates the important aspect of plant growth and development throughout its life cycle. So far, no systemic studies were performed to determine the ethylene effect on seed germination-associated epigenetic phenomenon. Henceforth, a laboratory investigation was performed to explore the epigenetic impact of ethephon (ET) priming on soybean [Glycine max (L.) Merrill] germination. Our findings demonstrated that ET (250 ppm) induced soybean germination significantly: (1) altered the chromatin architecture; (2) reduced the global DNA methylation and 5-methylcytosine levels; (3) reduced the DNA methyltransferases (DNMTs) activity; (4) decreased and increased the transcript levels of DNA methylases (viz. GmMET1, GmDRM1 and GmCMT3) and demethylase (viz. GmROS1), respectively; and (5) enhanced the endogenous levels of DNMT inhibitor, genistein. Based on these observations, a novel epigenetic impact of ethylene in seed germination process has been proposed.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

41

Numer

06

Opis fizyczny

Article 76 [11p.], fig.,ref.

Twórcy

  • ITC Limited, ITC Life Science and Technology Centre (LSTC), Peenya Industrial Area, 1st Phase, Bengaluru, Karnataka 560058, India
  • ITC Limited, ITC Life Science and Technology Centre (LSTC), Peenya Industrial Area, 1st Phase, Bengaluru, Karnataka 560058, India

Bibliografia

  • Agrahar-Murugkar D, Jha K (2009) Effect of sprouting on nutritional and functional characteristics of soybean (Glycine max L.). J Food Sci Technol 46:240–243
  • Ajouri A, Asgedom H, Becker M (2004) Seed priming enhances germination and seedling growth of barley under conditions of P and Zn deficiency. J Plant Nutr Soil Sci 167:630–636
  • Arase S, Kasai M, Kanazawa A (2012) In planta assays involving epigenetically silenced genes reveal inhibition of cytosine methylation by genistein. Plant methods 8:185
  • Archacki R et al (2013) BRAHMA ATPase of the SWI/SNF chromatin remodeling complex acts as a positive regulator of gibberellin-mediated responses in Arabidopsis. PLoS One 8:e58588
  • Assefa M, Hunje R, Koti R (2010) Enhancement of seed quality in soybean following priming treatment. Karnataka J Agric Sci 23:787–789
  • Association of Official Seed Analysts (AOSA) (1983) Seed vigor testing handbook. AOSA, Ithaca, NY, USA. (Contribution to the handbook on seed testing, 32)
  • Barnes S (1995) Effect of genistein on in vitro and in vivo models of cancer. J Nutr 125:777S–783S
  • Bellieny-Rabelo D, de Oliveira EAG, Ribeiro EdS, Costa EP, Oliveira AEA, Venancio TM (2016) Transcriptome analysis uncovers key regulatory and metabolic aspects of soybean embryonic axes during germination. Sci Rep 6:36009
  • Burgers WA, Fo Fuks, Kouzarides T (2002) DNA methyltransferases get connected to chromatin. Trends Genet 18:275–277
  • Corbineau FO, Xia Q, Bailly C, El-Maarouf-Bouteau H (2014) Ethylene, a key factor in the regulation of seed dormancy. Front Plant Sci 5:539
  • Chinnusamy V, Gong Z, Zhu JK (2008) Abscisic acid-mediated epigenetic processes in plant development and stress responses. J Integ Pl Bio 50:1187–1195
  • Doubt SL (1917) The response of plants to illuminating gas. Bot Gaz 63:209–224
  • Efroni I et al (2013) Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev Cell 24:438–445
  • Fajkus J, Vyskot B, Bezděk M (1992) Changes in chromatin structure due to hypomethylation induced with 5-azacytidine or DL-ethionine. FEBS Lett 314:13–16
  • Fojtova M, Van Houdt H, Depicker A, Kovařík A (2003) Epigenetic switch from posttranscriptional to transcriptional silencing is correlated with promoter hypermethylation. Plant Physiol 133:1240–1250
  • Garg R, Kumari R, Tiwari S, Goyal S (2014) Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes. PLoS One 9:e88947
  • Ghani M, Kulkarni KP, Song JT, Shannon JG, Lee J-D (2016) Soybean sprouts: a review of nutrient composition, health benefits and genetic variation. Plant Breed and Biotech 4:398–412
  • Hajiabbasi M, Tavakkol Afshari R, Abbasi A (2015) Effects of salicylic acid and ethylene on germination improvement of deteriorated seed of Glycine max (L.). Crop Res. 50:86–94
  • Hamayun M, Khan SA, Khan AL, Shin J-H, Ahmad B, Shin D-H, Lee I-J (2010) Exogenous gibberellic acid reprograms soybean to higher growth and salt stress tolerance. J Agric Food Chem 58:7226–7232
  • Hardy TM, Tollefsbol TO (2011) Epigenetic diet: impact on the epigenome and cancer. Epigenomics 3:503–518
  • Hasegawa J, Sakamoto T, Fujimoto S, Yamashita T, Suzuki T, Matsunaga S (2018) Auxin decreases chromatin accessibility through the TIR1/AFBs auxin signaling pathway in proliferative cells. Sci Rep 8:7773
  • He X-J, Chen T, Zhu J-K (2011) Regulation and function of DNA methylation in plants and animals. Cell Res 21:442–465
  • INFO Source Newsletter. World Soybean Production (2018). https://www.soymeal.org/newsletter/march-2018/
  • Ishibashi Y, Koda Y, Zheng S-H, Yuasa T, Iwaya-Inoue M (2012) Regulation of soybean seed germination through ethylene production in response to reactive oxygen species. Ann Bot 111:95–102
  • Kondo H, Miura T, Wada KC, Takeno K (2007) Induction of flowering by 5-azacytidine in some plant species: relationship between the stability of photoperiodically induced flowering and flower-inducing effect of DNA demethylation. Physiol Plantarum 131:462–469
  • Kumar V, Rani A, Dixit AK, Bhatnagar D, Chauhan G (2009) Relative changes in tocopherols, isoflavones, total phenolic content, and antioxidative activity in soybean seeds at different reproductive stages. J Agri Food Chem 57:2705–2710
  • Lämke J, Bäurle I (2017) Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants. Genome Biol 18:124
  • Lafon-Placette CM et al (2018) Changes in the epigenome and transcriptome of the poplar shoot apical meristem in response to water availability affect preferentially hormone pathways. J Exp Bot 69:537–551
  • Langeroodi A, Noora R (2017) Seed priming improves the germination and field performance of soybean under drought stress. J Ani Plant Sci 27:1611–1620
  • Lei L (2017) Gas hormone induces histone modifications. Nature plants 3:760
  • Lin J-Y et al (2017) Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. Proc Natl Acad Sci USA 114:E9730–E9739
  • Link A, Balaguer F, Goel A (2010) Cancer chemoprevention by dietary polyphenols: promising role for epigenetics. Biochem Pharmacol 80:1771–1792
  • Linkies A et al (2009) Ethylene interacts with abscisic acid to regulate endosperm rupture during germination: a comparative approach using Lepidium sativum and Arabidopsis thaliana. Plant Cell 21:3803–3822
  • Lu X et al (2010) Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress. BMC Genom 18:297
  • Lutts S et al (2016) Seed priming: new comprehensive approaches for an old empirical technique. In: Araujo S, Balestrazzi A (eds) New challenges in seed biology-Basic and translational research driving seed technology. InTechOpen, Rijeka, pp 1–46
  • Manoharlal R, Saiprasad G (2018) Soybean seed hormo-priming response to gibberellin and ethephon in combination with the antioxidant N-acetyl-l-cysteine. Seed Tech 39(1):35–52
  • Manoharlal R, Saiprasad G, Ullagaddi C, Kovařík A (2018) Gibberellin A₃ as an epigenetic determinant of global DNA hypo-methylation in tobacco. Biol Plantarum 62:11–23
  • Meng FR, Li YC, Yin J, Liu H, Chen XJ, Ni ZF, Sun QX (2012) Analysis of DNA methylation during the germination of wheat seeds. Biol Plantarum 56:269–275
  • Michalak M, Barciszewska MZ, Barciszewski J, Plitta BP, Chmielarz P (2013) Global changes in DNA methylation in seeds and seedlings of Pyrus communis after seed desiccation and storage. PLoS One 8:e70693
  • Moore TC (1979) Ethylene. Biochemistry and physiology of plant hormones. Springer, New York, pp 223–225
  • Mullin WJ, Xu W (2001) Study of soybean seed coat components and their relationship to water absorption. J Agri Food Chem 49:5331–5335
  • Neves DM et al (2017) Recurrent water deficit causes epigenetic and hormonal changes in citrus plants. Sci Rep 7:13684
  • Nonogaki H (2014) Seed dormancy and germination-emerging mechanisms and new hypotheses Front. Plant Sci 5:233
  • Parera C, Cantliffe J (1994) Presowing seed priming. Hort Rev 16:109–141
  • Pavlopoulou A, Kossida S (2007) Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution. Genomics 90:530–541
  • Ranal MA, Santana DGd, Ferreira WR, Mendes-Rodrigues C (2009) Calculating germination measurements and organizing spreadsheets. Braz J Bot 32:849–855
  • Samarah N, Mullen R, Cianzio S, Gladon R, Goggi S (2016) Ethylene evolution from soybean seeds podded and depodded related to seed desiccation tolerance during maturation. Seed Sci Tech 44:53–63
  • Santos AP, Ferreira LJ, Oliveira MM (2017) Concerted flexibility of chromatin structure, methylome, and histone modifications along with plant stress responses. Biology 6:3
  • Sarnowska E et al (2016) The role of SWI/SNF chromatin remodeling complexes in hormone crosstalk. Trends Plant Sci 21:594–608
  • Shuai H et al (2017) Exogenous auxin represses soybean seed germination through decreasing the gibberellin/abscisic acid (GA/ABA) ratio. Sci Rep 7:12620
  • Singh H, Darra B (1971) Influence of pre-soaking of seeds with gibberellin and auxins on growth and yield attributes of wheat (Triticum aestivum L.) under high salinity, sodium-adsorption ratio and boron levels. Indian J Agr Sci 41:998–1003
  • Singh P, Kumar R, Sabapathy S, Bawa A (2008) Functional and edible uses of soy protein products. Compr Rev Food Sci F 7:14–28
  • Taylor A, Allen P, Bennett M, Bradford K, Burris J, Misra M (1998) Seed enhancements. Seed Sci Res 8:245–256
  • Valledor L et al (2007) Involvement of DNA methylation in tree development and micropropagation. Plant Cell Tiss Organ Cult 91:75–86
  • Vanyushin BF, Ashapkin VV (2011) DNA methylation in higher plants: past, present and future. Biochem Biophys Acta 1809:360–368
  • Vlasova TI, Demidenko ZN, Kirnos MD, Vanyushin BF (1995) In vitro DNA methylation by wheat nuclear cytosine DNA methyltransferase: effect of phytohormones. Gene 157:279–281
  • Wang Z et al (2013) Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid-ethylene antagonism mediated by histone deacetylation. Plant Cell 25:149
  • Wang J, Li Z, Lei M, Fu Y, Zhao J, Ao M, Xu L (2017) Integrated DNA methylome and transcriptome analysis reveals the ethylene-induced flowering pathway genes in pineapple. Sci Rep 7:17167
  • Wierzbicki AT, Jerzmanowski A (2005) Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation. Genetics 169:997–1008
  • Xiao W, Custard KD, Brown RC, Lemmon BE, Harada JJ, Goldberg RB, Fischer RL (2006) DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell 18:805–814
  • Xie Q et al (2014) Genistein inhibits DNA methylation and increases expression of tumor suppressor genes in human breast cancer cells. Genes, Chromosomes Canc 53:422–431
  • Yamamuro C, Zhu J-K, Yang Z (2016) Epigenetic modifications and plant hormone action. Molecular plant 9:57–70
  • Yao D, Huo X, Zenda T, Liu S, Liu Y, Dai L, Duan H (2018) Effects of ethephon on DNA methylation and gene expressions associated with shortened internodes in maize. Biotechnol Biotechnol Equip 32:30–40
  • Y-Q An, Goettel W, Han Q, Bartels A, Liu Z, Xiao W (2017) Dynamic changes of genome-wide DNA methylation during soybean seed development. Sci Rep 7:12263
  • Zemach A, Grafi G (2007) Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation. Trends Plant Sci 12:80–85
  • Zhang X et al (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126:1189–1201
  • Zhang L, Hu Y, Yan S, Li H, He S, Huang M, Li L (2012) ABA-mediated inhibition of seed germination is associated with ribosomal DNA chromatin condensation, decreased transcription, and ribosomal RNA gene hypoacetylation. Plant Mol Biol 79:285–293
  • Zhang JJ et al (2017) Growth-inducing effects of argon plasma on soybean sprouts via the regulation of demethylation levels of energy metabolism-related genes. Sci Rep 7:41917
  • Zheng S-H, Dan K, Inouye J (1997) Relationships among ethylene production, hypocotyl growth and emergence in soybean seedlings. Jap J Crop Sci 66:402–406
  • Zhou C, Zhang L, Duan J, Miki B, Wu K (2005) HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell 17:1196–1204
  • Zhu J-K (2009) Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43:143–166
  • Zhu Y (2010) The epigenetic involvement in plant hormone signaling. Chin Sci Bull 55:2198–2203

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-544cbd4c-cc9d-4415-8230-e76623ca2d49
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.