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2011 | 33 | 4 |

Tytuł artykułu

Physio-biochemical analysis and transcript profiling of Saccharum officinarum L. submitted to salt stress

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
In an attempt to understand the molecular basis of salt-stress response in sugarcane, physio-biochemical assays and cDNA-RAPD-based gene expression studies under high salt (2% NaCl) supply regimes were initiated. The comparative rates of total protein, proline content and lipid peroxidation were found steadily increased, while total chlorophyll content was decreased in leaves of salttreated over untreated sugarcane plants at corresponding increase in soil electrical conductivity. The comparative transcript responses to salt stress were monitored by ribotyping of both treated and untreated sugarcane plants at early growth stage. Among 335 differentially expressed transcript-derived fragments, 156 up- and 85 down-regulated were reamplified and sequenced. They were functionally categorized as metabolism, DNA/RNA/cellular processes, signal transduction/cell rescue/defense, cell wall modifications, transcriptional regulation, transport/trafficking, retroelements and unknown/hypothetical proteins.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

33

Numer

4

Opis fizyczny

p.1411-1424,fig.,ref.

Twórcy

  • Molecular Biology and Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli, Pune, 412307, Maharashtra, India
  • Molecular Biology and Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli, Pune, 412307, Maharashtra, India
  • Molecular Biology and Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli, Pune, 412307, Maharashtra, India
  • Molecular Biology and Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli, Pune, 412307, Maharashtra, India
autor
  • Molecular Biology and Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli, Pune, 412307, Maharashtra, India

Bibliografia

  • Abdel HA, Khedr MAA, Amal A, Abdel W, Quick WP, Abogadallah GM (2003) Proline induces the expression of salt stress responsive proteins and may improve the adaptation of Pancratium maritimum L. to salt stress. J Exp Bot 54:2553–2562
  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
  • Arnon DI (1949) Copper enzymes in isolated chloroplasts polypheno1oxidase in Beta vulgaris. Plant Physiol 24:1–15
  • Ashraf M, Harris PJC (2004) Review: potential biochemical indicators of salinity tolerance in plants. Plant Sci 166:3–16
  • Azooz MM (2009) Salt stress mitigation by seed priming with salicylic acid in two faba bean genotypes differing in salt tolerance. Int J Agric Biol 11:343–350
  • Bates LS (1973) Rapid determination of free proline for water stress studies. Plant Soil 39:205–207
  • Bradford M (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein binding. Anal Biochem 72:248–254
  • Brands A and Ho TD (2002) Function of a plant stress-induced gene, HVA22. Synthetic enhancement screen with its yeast homolog reveals its role in vesicular traffic. Plant Physiol 130:1121–1131
  • Chantha SC, Tebbji F, Matton DP (2007) From the notch signaling pathway to ribosome biogenesis. Plant Signal Behav 2:168–170
  • Chen YH, Tsai YJ, Huang JZ, Chen FC (2005) Transcription analysis of peloric mutants of Phalaenopsis orchids derived from tissue culture. Cell Res 15:639–657
  • Creelman RA, Mullet JE (1995) Jasmonic acid distribution and action in plants: regulation during development and response to biotic and abiotic stress. Proc Natl Acad Sci 92:4114–4119
  • Delaplace P, Frettinger P, Ghanem ME, Blondiaux A, Bauwens J, Cotton S, Clerck CD, Dewalque A, Guy J, Heuze F, Massoz A, Tassignon T, van Aubel G, du Jardin P, Fauconnier ML (2009) Lipoxygenase pathway and antioxidant system in salt stressed tomato seedlings (Lycopersicon esculentum Mill.). Biotechnol Agron Soc Environ 13:529–536
  • Dhanapackiam S, Ilyas MHM (2010) Effect of salinity on chlorophyll and carbohydrate contents of Sesbania grandiflora seedlings. Indian J Sci Technol 3:64–66
  • Edreva A, Velikova V, Tsonev T, Dagnon S, Gürel A, Aktaş L, Gesheva E (2008) Stress-protective role of secondary metabolites: diversity of functions and mechanisms. Gen Appl Plant Physiol 34:67–78
  • Foyer HC (2005) Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses. Plant Cell 17:1866–1875
  • Gao S, Ouyang C, Wang S, Xu Y, Tang L, Chen F (2008) Effects of salt stress on growth, antioxidant enzyme and phenylalanine ammonia-lyase activities in Jatropha curcas L. seedlings. Plant Soil Environ 54(9):374–381
  • Gazzarrini S, Mccourt P (2003) Cross-talk in plant hormone signalling: what Arabidopsis mutants are telling us. Ann Bot 91:605–612
  • Grandbastien MA, Audeon C, Bonnivard E, Casacuberta JM, Chalhoub B, Costa APP, Le QH, Melayah D, Petit M, Poncet C, Tam SM, van Sluys MA, Mhiri C (2005) Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae. Cytogenet Genome Res 110:229–241
  • Han GP, Wu QL (2004) Comparative properties of sugarcane rind and wood strands for structural composite manufacturing. For Prod J 54:283–288
  • Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ (2000) Plant cellular and molecular responses to high salinity. Annu Rev Plant Physiol Plant Mol Biol 51:463–499
  • Heath RL, Parker L (1968) Photoperoxidation in isolated chloroplasts. I. Kinetics and stoichiometry of fatty acid peroxidation. Arch Biochem Biophys 125:189–198
  • Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC (2003) The basic helix–loop–helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol 20:735–747
  • Hussain A, Khan ZI, Ashraf M, Rrashid MH, Akhtar MS (2004) Effect of salt stress on some growth attributes of sugarcane cultivars CP-77–400 and COJ-84. Int J Agric Biol 6:188-191
  • Joshi GV, Naik GR (1981) Response of sugarcane to different types of salt stress. Plant Soil 56:255–263
  • Joshi V, Joung JG, Fei Z, Jander G (2010) Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress. Amino Acids 39:933–947
  • Kamei A, Umezawa T, Motoaki S, Zhu JK, Shinozaki K (2003) Analysis of gene expression profile in vegetative tissue of Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1. Abstract of the poster submitted in the Annual Plant and Animal Genome Meeeting, San Diego, USA, p 163
  • Kawar, PG, Pagariya MC, Dixit GB, Theertha Prasad D (2010) Identification and Isolation of SCGS Phytoplasma-specific Fragments by Riboprofiling and Development of Specific Diagnostic Tool@. J Plant Biochem Biotechnol 19:185–194
  • Khan MH, Panda SK (2008) Alterations in root lipid peroxidation and antioxidative responses in two rice cultivars under NaCl-salinity stress. Acta Physiol Plant 30:81–89
  • Krawczyk WS (1977) Heavy meromyosin binding microfilaments in epidermal cells during wound healing. Arch Dermatol Res 258:63–68
  • Kumar SG, Reddy AM, Sudhakar C (2003) NaCl effects of proline metabolism in two high yielding genotypes of mulberry (Morus alba L.) with contrasting salt tolerance. Plant Sci 165:1245–1251
  • Laity JH, Lee BM, Wright PE (2001) Zinc finger proteins: new insights into structural and functional diversity. Curr Opin Struct Biol 11:39–46
  • Lee SH, Lee KW, Kim KY, Choi GJ, Yoon SH, Ji HC, Seo S, Lim YC, Ahsan N (2009) Identification of salt-stress induced differentially expressed genes in barley leaves using the annealing control-primer-based gene fishing technique. Afr J Biotechnol 8:1326–1331
  • Lee S, Lee J, Paek KH, Kwon SY, Cho HS, Kim SJ, Park JM (2010) A novel WD40 protein, BnSWD1, is involved in salt stress in Brassica napus. Plant Biotechnol Rep 4:165–172
  • Leung J, Giraudat J (1998) Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 49:199–222
  • Li A, Wang X, Leseberg CH, Jia J, Mao L (2008) Biotic and abiotic stress responses through calcium-dependent protein kinase (CDPK) signaling in wheat (Triticum aestivum L.). Plant Signal Behav 3:654–656
  • Li LH, Qiu XH, Li XH, Wang SP, Zhang Q, Lian XM (2010) Transcriptomic analysis of rice responses to low phosphorus stress. Chin Sci Bull 55:251–258
  • Loponen J, Mikola M, Katina K, Sontag-Strohm T, Salovaara H (2004) Degradation of HMW glutenins during wheat sourdough fermentations. Cereal Chem 81:87–93
  • Lutts S, Kinet JM, Bouharmont J (1996) Effects of salt stress on growth mineral nutrition and proline accumulation in relation to osmotic adjustment in rice (Oryza sativa L.) cultivars differing in salinity tolerance. Plant Growth Regul 19:207–218
  • Maccarrone M, Melino G, Finazzi-Agro A (2001) Lipoxygenases and their involvement in programmed cell death. Cell Death Differ 8:776–784
  • Moore SH, Wolcott MC (2001) Mapping and interpreting electrical conductivity in production fields. La Agric 44:25–27
  • Nimbalkar SB, Harsulkar AM, Giri AP, Sainani MN, Franceschib V, Gupta VS (2006) Differentially expressed gene transcripts in roots of resistant and susceptible chickpea plant (Cicer arietinum L.) upon Fusarium oxysporum infection. Physiol Mol Plant Pathol 68:176–188
  • Pagariya MC, Kulkarnai PA, Prabu GR, Devarumath RM, Kawar PG (2010) Transcriptomic identification of candidate genes involved in sugarcane responses to salt stress based on cDNA-SSH analysis. Abstract of the poster submitted in the Annual Plant and Animal Genome Meeeting, San Diego, USA, p 4
  • Parvaiz A, Satyawati S (2008) Salt stress and phyto-biochemical responses of plants: a review. Plant soil environ 54:89–99
  • Patade VY, Bhargava S, Suprasanna P (2009) Halopriming imparts tolerance to salt and PEG induced drought stress in sugarcane. Agr Ecosyst Environ 134:24–28
  • Potters G, Pasternak TP, Guisez Y, Palme KJ, Jansen MA (2007) Stress induced morphogenic responses: growing out of trouble? Trends Plant Sci 12:98–105
  • Prabu GR, Kawar PG, Pagariya MC, Theertha Prasad D (2010) Identification of water-deficit stress up-regulated genes in sugarcane. Plant Mol Biol Rep. doi:10.1007/s11105-010-0230-0
  • Raffaele S,Mongrand S, Gamas P,NiebelA,Ott T (2007)Genome-wide annotation of remorins, a plant-specific protein family: evolutionary and functional perspectives. Plant Physiol 145:593–600
  • Ramamoorthy R, Jiang SY, Kumar N, Venkatesh PN, Ramachandran S (2008) A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant Cell Physiol 49:865–879
  • Rayment GE, Higginson FR (1992) Australian laboratory handbook of soil and water chemical methods. Australian Soil and Land Survey Handbooks, vol 3. Inkata Press, Melbourne
  • Reezi S, Babalar M, Kalantari S (2009) Silicon alleviates salt stress, decreases malondialdehyde content and affects petal color of salt stressed cut rose (Rosa xhybrida L.) ‘Hot Lady’. Afr J Biotechnol 8:1502–1508
  • Roychoudhury A, Basu S, Sarkar SN, Sengupta DN (2008) Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars. Plant Cell Rep 27:1395–1410
  • Sakamoto H, Matsuda O, Iba K (2008) ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in saltstress tolerance in Arabidopsis thaliana. Plant J 56:411–422
  • Sambrook J, Fritsch E, Maniatis T (1989) In: Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor press, New York
  • Seong ES, Choi D, Cho HS, Lim CK, Cho HJ, Wang MH (2007) Characterization of a stress-responsive ankyrin repeat-containing zinc finger protein of Capsicum annuum (CaKR1). J Biochem Mol Biol 40:952–958
  • Smart CC, Fleming AJ (1996) Hormonal and environmental regulation of a plant PDR5-like ABC transporter. J Biol Chem 271:19351–19357
  • Stockinger EJ, Mao Y, Regier MK, Triezenberg SJ, Thomashow MF (2001) Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression. Nucleic Acids Res 29:1524–1533
  • Turan MA, Elkarim AHA, Taban N, Taban S (2009) Effect of salt stress on growth, stomatal resistance, proline and chlorophyll concentrations on maize plant. Afr J Agric Res 4:893–897
  • van-Nocker S, Ludwig P (2003) The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function. BMC Genomics 4:50–61
  • Verma D, Singla-Pareek SL, Rajagopal D, Reddy MK, Sopory SK (2007) Functional validation of a novel isoform of Na⁺/H⁺ antiporter from Pennisetum glaucum for enhancing salinity tolerance in rice. J Biosci 32(3):621–628
  • Walia H, Wilson C, Wahid A, Condamine P, Cui X, Close TJ (2006) Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Funct Integr Genomics 6:143–156
  • Wan XY, Liu JY (2008) Comparative proteomics analysis reveals an intimate protein network provoked by hydrogen peroxide stress in rice seedling leaves. Mol Cell Proteomics 7:1469–1488
  • Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9:244–252
  • Wessler SR (1996) Plant retrotransposons: turned on by stress. Curr Biol 6:959–961
  • Xiong L, Yang Y (2003) Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acidinducible mitogen-activated protein kinase. Plant Cell 15:745–759
  • Yazaki K (2006) ABC transporters involved in the transport of plant secondary metabolites. FEBS Lett 580:1183–1191
  • Zhao J, Liu Y, Wei X, Yuan C, Yuan X, Xiao X (2009) A novel WD-40 repeat protein WDR26 suppresses H₂O₂-induced cell death in neural cells. Neurosci Lett 460:66–71
  • Zhu JK (2001) Plant salt tolerance. Trends Plant Sci 6:66–71
  • Zhu J, Shi H, Lee B, Damsz B, Cheng S, Stirm V, Zhu JK, Hasegawa PM, Bressan RA (2004) An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. PNAS 101:9873–9878
  • Zwenger S, Basu C (2007) In silico analysis of terpene synthase genes in Arabidopsis thaliana. EXCLI Journal 6:203–211

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