Ribotyping as a molecular biological technique for studying diversity in Shigella isolates - a review

• Autorzy: Pal P.
• Języki publikacji: EN

Abstrakty

EN

Diarrhoea in developing countries is caused by an increasingly long list of bacterial, viral, and parasitic pathogens with rotavirus, Enterotoxigenic Escherichia coli, Campylobacter, Shigella, and Salmonella heading the list. Using methods to detect most of the known enteropathogens, one or more enteropathogen(s) is isolated in two-thirds of diarrhoeal illnesses in the developing world. Deoxyribonucleic acid probes have proved very useful in detecting pathogens such as enterotoxigenic (ETEC), enteroinvasive (EIEC), enteropathogenic E. coli (EPEC), and Shigella but have not yet proved to be particularly rapid or less expensive. Molecular biology has proved useful in epidemiological studies as a means of strain identification and detection of genome diversity. Since the introduction of ribonucleic acid gene restriction patterns as taxonomic tools in 1986, ribotyping has become an established method for systematics, epidemiological, ecological population and genome diversity studies of microorganisms including Shigella. The technological development culminated in the automation of ribotyping which allowed for high-throughput applications. PCR ribotyping has proved being a highly discriminatory, flexible, robust and cost-efficient routine technique which makes inter-laboratory comparison and build of ribotype databases possible, too. The aim of the present review is to determine the present status of ribotyping technique in detecting the diversity in Shigella isolates.

Słowa kluczowe

EN

ribotyping; molecular biology; diversity; Shigella; isolate; bacteria; systematics; enteropathogen; taxonomy

• Wydawca: -
• Czasopismo: International Letters of Natural Sciences
• Rocznik: 2014
• Tom: 14
• Opis fizyczny: p.84-92,ref.

Twórcy

autor

Pal P.

• Department of Zoology, Scottish Church College, 1 and 3 Urquhart Square, Kolkata - 700006, India

Bibliografia

• [1] Ansaruzzaman M., Kibriya A.K.M.G., Rahman A., Neogi P.K.B., Faruque A.S.G., Rowe B., Albert M.J., J Clin Microbiol 33 (1995) 1423-1425.
• [2] Anton A. I., Martinez-Murcia A.J., Rodriguez-Valera F., J Mol Evol 47 (1998) 62-72.
• [3] Bachmann B.J., Microbiol. Rev. 54 (1990) 130-197.
• [4] Bouchet V., Huot H., Goldstein R., Clin Microbiol Rev 21 (2008) 262-273.
• [5] Bratoeva M.P., John J.F., Barg N.L., J Clin Microbiol 30 (1992) 1428-1431.
• [6] Brenner D.J., Fanning G.R., Miklos G.V., Steigerwalt A.G., Int J Syst Bacteriol 23 (1973) 1-7.
• [7] Carlin N.I.A., Lindberg A.A., J Clin Microbiol 18 (1983) 1183-1189.
• [8] Carlin, N.I.A., Wehler T., Lindberg A.A., Infect Immun 53 (1986) 103-109.
• [9] Cartwright C., J Infect Dis 172 (1995) 1638-1639.
• [10] Christensen H., Jorgensen K., Olsen J.E., Microbiology 145 (1999) 99105.
• [11] Coimbra R.S. atr al., J Clin Microbiol 39 (2001) 618-621.
• [12] Doolittle W.F., Pace N.R., Proc Natl Acad Sci USA 68 (1971) 17861790.
• [13] Ewing W.H., Elsevier Publishing Co 4th ed. (1986) 135-172.
• [14] Flórez A.J., Pérez-Roth E., González-Linares S., Méndez-Álvarez S., Int Microbiol 8 (2005) 133-136
• [15] Fox, G.E. et al., Science 209 (1980) 457-463.
• [16] Fullá N., Prado V., Durán C., Lagos R., Levine M.M., Am J Trop Med Hyg 72(6) (2005) 851-854.
• [17] Grimont F., Grimont P.A., Ann Inst Pasteur Microbiol 137B (1986) 165-175.
• [18] Grimont F. et al., J Med Microbiol 56 (2007) 749-754.
• [19] Gross R.J., Thomas L.V., Cheasty T., Rowe B., Lindberg A.A., J Clin Microbiol 27 (1989) 829-831.
• [20] Gurtler V., Barrie H.D., Microbiology 141 (1995) 1255-1265.
• [21] Gurtler V., Stanisich V.A., Microbiology142 (1996) 3-16.
• [22] Hinojosa-Ahumada M., J Clin Microbiol. 29 (1991) 2380-2384.
• [23] Jamil M. et al., Pak J Med Sci 23(2) (2007) 233-237.
• [24] Klappenbach J.A., Saxman P.R., Cole J.R., Schmidt T.M., Nucleic Acids Res 29 (2001) 181-184.
• [25] Kolbert C.P., Persing D.H., Curr Opin Microbiol 2 (1999) 299-305.
• [26] Kostman J.R., Alden M.B., Mair M., Edlind T.D., LiPuma J.J., Stull T.L., J Infect Dis 171 (1995) 204-208.
• [27] Kostman J.R., Edlind T.D., LiPuma J.J., Stull T.L., J Clin Microbiol 30 (1992) 2084-2087.
• [28] Kuo C.Y. et al., J. Microbiol Immunol Infect 41 (2008) 107-111.
• [29] Maidak B.L., Olsen G.J., Larsen N., Overbeek R., McCaughey M.J., Woese C.R., Nucleic Acids Res 25 (1997) 109-111.
• [30] Maiden M.C. et al., Proc Natl Acad Sci USA 95 (1998) 3140-3145.
• [31] Matsushita S., Noguchi Y., Yanagawa Y., Kobayashi K., Nakaya H., Igarashi H., Kudoh Y., Kansenshogaku Zasshi 71 (1997) 412-416.
• [32] Mendoza M.C, Martin M.C., Gonzalez-Hevia M.A., Epidemiol Infect 116 (1996) 127-35.
• [33] Morris G.K., Wells J.G., Appl Microbiol 27 (1974) 312-316.
• [34] Nastasi A., Mammina C., Res Microbiol 146(1) (1995) 99-106.
• [35] Nastasi A., Pignato S., Mammina C., Giammanco G., Epidemiol Infect 110 (1993) 23-30.
• [36] Nastasi A., Villafrate M.R., Mammina C., Pontello M., Ricci M., Res Microbiol 141 (1990) 1163-1172.
• [37] Navia M.M., and Gascón V.J., Infect Genet Evol 5 (2005) 349-353.
• [38] Ochman H., Whittam T.S., Caugant D.A., Selander R.K., J Gen Microbiol 129 (1983) 2715-2726.
• [39] Oliveira F.A. de, Frazzon A.P., Brandelli A., Tondo E.C., J Infect Develop Country 1 (2007) 170-176.
• [40] Pace N.R., Olsen G.J., Woese C.R., Cell 45 (1986) 325-326.
• [41] Paula C.M.D., Geimba M.P, do Amaral P.H., Tondo E.C., Braz J Microbiol 40 (2010) 966-977.
• [42] Penatti M.P.A., Hollanda L.M., Nakazato G., Campos T.A., Lancellotti M., Angellini M., Brocchi M., Rocha M.M.M., Silveira W.D. da., Braz J Med Biol Res (2007).
• [43] Ranjbar R., Soltan Dallal M.M., Talebi M., Pourshafie M.R., J Health Popul Nutr 26 (2008) 426-430.
• [44] Ribeiro R.V. (2000): http://www.ccs.saude.gov.br/visa/publicacoes/arquivos/bol7.pdf
• [45] Ryley H.C., Millar-Jones L., Paull A., Weeks J., J Med Microbiol 43 (1995) 436-441.
• [46] Sebaihia M. et al., Nat Genet 38 (2006) 779-786.
• [47] Selander R.K., Caugant D.A., Ochman H., Musser J.M., Gilmour M.N., Whittam T.S., Appl Environ Microbiol 51 (1986) 873-884.
• [48] Shreve M.R., Johnson S.J., Milla C.E., Wielinski C.L., Regelmann W.E., Am J Respir Crit Care Med 155 (1997) 984-989.
• [49] Silva T., Nogueira P.A., Magalhães G.F., Grava A.F., Silva L.H.P. da, Orlandi P.P., Mem Inst Oswaldo Cruz 103(7) (2008) 731-733.
• [50] Smith-Vaughan H.C., Sriprakash K.S., Mathews J.D., Kemp D.J., J Clin Microbiol 33 (1995) 1192-1195.
• [51] Southern E.M., J Mol Biol 98 (1975) 503-517.
• [52] Talukder K.A., Islam M.A., Dutta D.K, Hassan F., Safa A., Nair G.B., Sack D.A., J Clin Microbiol 40 (2002) 2490-2497.
• [53] Talukder, K.A., Khajanchi B. K., Islam M.A., Dutta D.K., Islam Z., Khan S.I., Nair G.B., Sack D.A., Epidemiol Infect 134 (2006 a) 1249-1256.
• [54] Talukder K.A. et al., J Med Microbiol 55 (2006 b) 1257-1263.
• [55] WHO (2005), http://www.who.int/vaccine_research/documents/Guidelines_Shigellosis.pdf.
• [56] Woese C.R. (1996). CRC Press, Boca Raton, FL.
• [57] Woese C.R., Microbiol Rev 51 (1987) 221-271.
• [58] Yogev D., Halachmi D., Kenny G.E., Razin S., J Clin Microbiol 26 (1988) 1198-1201.