PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
2016 | 25 | 6 |

Tytuł artykułu

The abundance and community composition of ammonia-oxidizing prokaryotes in small-reservoir sediments in China’s huashan watershed

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
We investigated the effects of nutrient levels on the abundance and diversity of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), seven surface sediment samples from small reservoirs at different nutrient levels were collected from the eastern, central, and western parts of Huashan watershed in Chuzhou, Anhui Province to determine the abundance and community composition of AOA and AOB. The results showed that the abundance of bacterial amoA gene (1.85×107 to 2.86×108 g/dry sediment) was higher than that of archaeal amoA gene (1.25×105 to 1.23×106 g/dry sediment) in all sediment samples. The abundance of the archaeal amoA gene exhibited significant positive correlations with total nitrogen concentrations, whereas the abundance of bacterial amoA gene showed significantly negative correlation with pH. Archaeal amoA gene sequences included Nitrososphaera and Nitrosopumilus clusters and the majority of Nitrosospira and Nitrosomonas oligotropha lineages.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

25

Numer

6

Opis fizyczny

P.2665-2673,fig.,ref.

Twórcy

autor
  • State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • State Key Laboratory of Lake Science and the Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
autor
  • State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China
  • College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
autor
  • State Key Laboratory of Lake Science and the Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China

Bibliografia

  • 1. FRANCIS C.A., ROBERTS K.J., BEMAN J.M., SANTORO A.E., OAKLEY B.B. Ubiquity and diversity of ammoniaoxidizing archaea in water columns and sediments of the ocean. P Natl Acad Sci USA 102 (41), 14683, 2005.
  • 2. HERMANSSON A., LINDGREN P.E. Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR. Appl Environ Microbiol 67 (2), 972, 2001.
  • 3. BEMAN J.M., FRANCIS C.A. Diversity of ammoniaoxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico. Appl Environ Microbiol 72 (12), 7767, 2006.
  • 4. JIA Z., CONRAD R. Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11 (7), 1658, 2009.
  • 5. WEIDLER G.W., DORNMAYR-PFAFFENHUEMER M., GERBL F.W., HEINEN W., STAN-LOTTER H. Communities of Archaea and Bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota. Appl Environ Microbiol 73 (1), 259, 2007.
  • 6. DI H.J., CAMERON K.C., SHEN J.P., WINEFIELD C.S., O’CALLAGHAN M., BOWATTE S. Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils. Nat Geosci 2 (9), 621, 2009.
  • 7. BERNHARD A.E., BOLLMANN A. Estuarine nitrifiers: new players, patterns and processes. Estuar Coast Shelf S 88 (1), 1, 2010.
  • 8. HU A.Y., YAO T.D., JIAO N.Z., LIU Y.Q., YANG Z., LIU X.B. Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau. Freshwater Biol 55 (11), 2375, 2010.
  • 9. LIU B., LI Y.M., ZHANG J.P., ZHOU X.H., WU C.D. Abundance and diversity of ammonia-oxidizing microorganisms in the sediments of Jinshan Lake. Curr Microbiol 69 (5), 751, 2014.
  • 10. ZHAO D., ZENG J., WAN W., LIANG H., HUANG R., WU Q.L. Vertical distribution of ammonia-oxidizing archaea and bacteria in sediments of a Eutrophic Lake. Curr Microbiol 67 (3), 327, 2013,
  • 11. ZENG J., ZHAO D.Y., HUANG R., WU Q.L. Abundance and community composition of ammonia-oxidizing archaea and bacteria in two different zones of Lake Taihu. Can J Microbiol 58 (8), 1018, 2012.
  • 12. LIU Y., ZHANG J.X., ZHAO L., LI Y.Z., DAI Y., XIE S.G. Distribution of sediment ammonia-oxidizing microorganisms in plateau freshwater lakes. Appl Microb Biot 99 (10), 4435, 2015.
  • 13. ZHAO D.Y., LUO J., ZENG J., WANG M., YAN W.M., HUANG R. Effects of submerged macrophytes on the Abbreviation Full name abundance and community composition of ammoniaoxidizing prokaryotes in a eutrophic lake. Environ Sci Pollut Res 21 (1), 389, 2014.
  • 14. HERRMANN M., SAUNDERS A.M., SCHRAMM A. Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora. Appl Environ Microbiol 74 (10), 3279, 2008.
  • 15. ZHENG Y., HOU L., NEWELL S., LIU M., ZHOU J., ZHAO H., YOU L., CHENG X. Community dynamics and activity of ammonia-oxidizing Prokaryotes in intertidal sediments of the Yangtze Estuary. Appl Environ Microbiol 80 (1), 408, 2014.
  • 16. CAO H.L., HONG Y.G., LI M., GU J.D. Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea. Anton Leeuw Int J G 100 (4), 545, 2011.
  • 17. WUCHTER C., ABBAS B., COOLEN M.J.L., HERFORT L., van BLEIJSWIJK J., TIMMERS P., STROUS M., TEIRA E., HERNDL G.L., MIDDELBURG J.J. Archaeal nitrification in the ocean. Proc Natl Acad Sci USA 103 (33), 12317, 2006.
  • 18. LIU Z.H., HUANG S.B., SUN G.P., XU Z.C., XU M.Y. Diversity and abundance of ammonia-oxidizing archaea in the Dongjiang River. Microbiol Res 166 (5), 337, 2011.
  • 19. ERGUDER T.H., BOON N., WITTEBOLLE L., MARZORATI M., VERSTRAETE W. Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol Rev 33 (5), 855, 2009.
  • 20. SUN W., XIA C., XU M., GUO J., WANG A., SUN G. Distribution and abundance of archaeal and bacterial ammonia oxidizers in the sediments of the Dongjiang River, a drinking water supply for Hong Kong. Microbes Environ 28 (4), 457, 2013.
  • 21. LI M., CAO H.L., HONG Y.G., GU J.D. Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments. Appl Microbiol Biot 89 (4), 1243, 2011.
  • 22. WANG X.Y., WANG C., BAO L.L., XIE S.G. Impact of carbon source amendment on ammonia-oxidizing microorganisms in reservoir riparian soil. Ann Microbiol 65 (3), 1411, 2014.
  • 23. MOSIER A.C., FRANCIS C.A. Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol 10 (11), 3002, 2008.
  • 24. NICOL G.W., LEININGER S., SCHLEPER C., PROSSER J.I. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10 (11), 2966, 2008.
  • 25. AVRAHAMI S., CONRAD R. Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures. Appl Environ Microbiol 69 (10), 6152, 2003.
  • 26. OKANO Y., HRISTOVA K.R., LEUTENEGGER C.M., JACKSON L.E., DENISON R.F., GEBREYESUS B. Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70 (2), 1008, 2004.
  • 27. HE J.Z., SHEN J.P., ZHANG L.M., ZHU Y.G., ZHENG Y.M., XU M.G. Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammoniaoxidizing archaea of a Chinese upland red soil under longterm fertilization practices. Environ Microbiol 9 (9), 2364, 2007.
  • 28. HU B.L., LIU S.A., SHEN L.D., ZHENG P., XU X.Y., LOU L.P. Effect of different ammonia concentrations on community succession of ammonia-oxidizing microorganisms in a simulated paddy soil column. PLOS One 7 (8), e44122, 2012.
  • 29. LONG X., CHEN C.R., XU Z.H., LINDER S., HE J.Z. Abundance and community structure of ammonia oxidizing bacteria and archaea in a Sweden boreal forest soil under 19-year fertilization and 12-year warming. J Soil Sediment 12 (7), 1124, 2012.
  • 30. ZENG J., ZHAO D., YU Z., HUANG R., WU Q.L. Temperature Responses of Ammonia-Oxidizing Prokaryotes in Freshwater Sediment Microcosms. PLOS One 9 (6), e100653, 2014.
  • 31. WANG Y.N., KE X.B., WU L.Q., LU Y.H. Community composition of ammonia-oxidizing bacteria and archaea in rice field soil as affected by nitrogen fertilization. Syst Appl Microbial 32 (1), 27, 2009.
  • 32. TAN H.B., XU M.K., LI X.Y., ZHANG H.W., ZHANG C.G. Effects of chlorimuron-ethyl application with or without urea fertilization on soil ammonia-oxidizing bacteria and archaea. J Hazard Mater 260 368, 2013.
  • 33. WANG J.Q., DING J.H., GUO K. Nitrogen Budgeting of Huashan Hydrological Experiment Watershed in Chuzhou. Journal of Ecology and Rural Environment 31 (5), 677, 2015.
  • 34. ROTTHAUWE J.H., WITZEL K.P., LIESACK W. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbio 63 (12), 4704, 1997.
  • 35. THOMPSON J.D., GIBSON T.J., PLEWNIAK F., JEANMOUGIN F., HIGGINS D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 (24), 4876, 1997.
  • 36. SCHLOSS P.D., HANDELSMAN J. Introducing DOTUR, a computer program for defining operational taxonomic unites and estimating species richness. Appl Environ Microbio 71 (3), 1501, 2005.
  • 37. TAMURA K., DUDLEY J., NEI M., KUMAR S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24 (8), 1596, 2007.
  • 38. HERRMANN M., SAUNDERS A.M., SCHRAMM A. Effect of lake trophic status and rooted macrophytes on community composition and abundance of ammoniaoxidizing prokaryotes in freshwater sediments. Appl Environ Microbiol 75 (10), 3127, 2009.
  • 39. WU Y.C., XIANG Y., WANG J.J., ZHONG J.C., HE J.Z., WU Q.L. Heterogeneity of archaeal and bacterial ammoniaoxidizing communities in Lake Taihu, China. Environ Microbial Rep 2 (4), 569, 2010.
  • 40. LIMPIYAKORN T., SONTHIPHAND P., RONGSAYAMANONT C., POLPRASERT C. Abundance of amoA genes of ammonia-oxidizing archaea and bacteria in activated sludge of full-scale wastewater treatment plants. Bioresour Technol 102 (4), 3694, 2011.
  • 41. WANG Y.F., FENG Y.Y., MA X.J., GU J.D. Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove. Appl Microbiol Biotechnol 97 (17), 7919, 2013.
  • 42. ERGUDER T.H., BOON N., WITTEBOLLE L., MARZORATI M., VERSTRAETE W. Environmental actors shaping the ecological niches of ammonia oxidizing archaea. FEMS Microbiol Rev 33 (5), 855, 2009.
  • 43. SUI Q.W., LIU C., DONG H.M., ZHU Z.P. Effect of ammonium nitrogen concentration on the ammoniaoxidizing bacteria community in a membrane bioreactor for the treatment of anaerobically digested swine wastewater. J Biosci Bio 118 (3), 277, 2014.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-b70de91d-f553-492b-b6d0-7a24ca24fdc7
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.