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1996 | 43 | 1 |

Tytuł artykułu

Nucleotide probes of DNA polymerases

Autorzy

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The modified nucleotides, N2-(p-n-butylphenyl)dGTP and 2-(p-n-butylanilino) dATP and related compounds have been developed as inhibitor-probes of B family DNA polymerases. Synthetic approaches to these compounds are summarized. The nucleotides are potent, non-substrate inhibitors of DNA polymerase a. In contrast, they inhibit other members of the family with less potency but act as substrates for these enzymes. Modelling of the inhibitor: enzyme binding mechanism has been done based on the known structure of E. coli DNA polymerase I, and site-directed muta­genesis experiments to evaluate this mechanism are proposed.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

43

Numer

1

Opis fizyczny

p.115-124,fig.

Twórcy

autor
  • University of Massachusetts Medical School, Worcester, MA 01655 USA

Bibliografia

  • 1. Wright, G.E. & Brown, N.C. (1990) Deoxyribo- nucleotide analogs as inhibitors and substrates of DNA polymerases. Pharmac. The rap. 47, 447-497.
  • 2. Khan, M.N., Wright, G.E. & Brown, N.C. (1991) The molecular mechanism of inhibition of alpha-type DNA polymerases by N2-(butyl- phenyDdGTP and 2-(butyIanilino)dATP: variation in susceptibility to polymerization. Nucleic Acids Res. 19,1627-1632.
  • 3. Misra, U.K., Khan, N.N., Agrawal, S. & Wright, G.E. (1992) Chemical and enzymatic incorporation of N2-(p-n-butylphenyl)-2'-de- oxvguanosine into an oligodeoxyribonucleo- tide. Nucleic Acids Res. 20,4547-4551.
  • 4. Braithwaite, D.K. & Ito, J. (1993) Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 21, 787-802.
  • 5. Khan, N.N., Reha-Krantz, L.J. & Wright, G.E. (1994) Ana lysis of i nhibi tors of bacteriophage T4 DNA polymerase. Nucleic Acids Res. 22,232-237.
  • 6. Wright, G.K., Brown, N.C. & Baril, E.F. (1980) Butylarulinouracil: A selective inhibitor of Hel.a DNA synthesis and I IeLa cell DNA polymerase alpha. Nucleic Acids Res. 8,99-109.
  • 7. Clements. J.E., D'Ambrosio, J. & Brown, N.C. (1975) Inhibition of Bacillus subtilis DNA polymerase III by phenylhydrazinopyrimidines. Demonstration of a drug-induced deoxyribo­nucleic acid-enzyme complex. /. Biol. Chem. 250, 522-526.
  • 8. Wright, G.E., Brown, V.M., Baril, E.F. & Brown, N.C. (1982) Design and characterization of .N/2-arylaminopurines which selectively inhibit replicative DNA synthesis and replication- specific DNA polymerases: guanine derivatives specific for mammalian DNA polymerase alpha and bacterial DNA polymerase 111. Nucleic Acids Res. 10,4431-4440.
  • 9. Wright, G.E. & Dudycz, L.W. (1984) Synthesis and characterization of ,\'?-(/?-w-butylphenyl)- 2'-deoxyguanosine and its 5'-triphosphate and their inhibition of lleLa DNA polymerase a. /. Med. Chem. 27,175-181.
  • 10. Robins, M.J. & Wilson, J.S. (1981) Smooth and efficient deoxygenation of secondary alcohols. A general procedure for the conversion of ribonucleosides to 2'-deoxvribonucleosides. /. Am. Chem. Soc. 103,932-933.
  • 11. Wright, G.E., Dudycz, I..W., Kazimierczuk, Z., Brown, N.C. & Khan, N.N. (1987) Synthesis, cell growth inhibition, and antitumor screening of 2-(p-H-butylanilino)purines and their nucleo­side analogs. J. Med. Chem. 30,109-116.
  • 12. Khan, N.N., Wright, G.E., Dudycz, L.W. & Brown, N.C. (1985) Elucidation of the mecha­nism of selective inhibition of mammalian DNA polymerases by 2-butylanilinopurines: development and characterization of 2-(;>-«- butylanilino)adenine and its deoxyribonucleo- tides. Nucleic Acids Res. 13,6331-6342.
  • 13. Khan, N., Wright, G.E., Dudycz, L.W. & Brown, N.C. (1984) Butylphenyl dGTP: A Selective and potent inhibitor of mammalian DNA poly­merase alpha. Nucleic Acids Res. 12,3695-3705.
  • 14. Yamaguchi, T., Sato, K. & Saneyoshi, M. (1995) Synthesis and biological activities of sugar- modified 2-(p-n-butylanilino)-2'-dcoxyadeno- sine analogues. Nucleosides & Nucleotides 14, 529-532.
  • 15. Yanachkov, I. & Wright, G.E. (1994) Synthesis of the P:'^-methylene analog of N2-(p-n-butyl- phenyl)-2'-deoxyguanosine 5'-triphosphate: a non-substrate inhibitor of DNA polymerases. Nucleosides & Nucleotides 13,339-350.
  • 16. Wright, G.E., Hubscher, U., Khan, N.N., Focher, F. & Verri, A. (1994) Inhibitor analysis of calf thymus DNA polymerases a, 8 and t. FEBS Lett. 341,128-130.
  • 17. McClure, W.R. & Jovin, T.M. (1975) The steady state kinetic parameters and non-processivity of Escherichia coli deoxyribonucleic acid polymerase I. /. Biol. Chem. 250,4073-4080.
  • 18. Oil is, D.L., Brick, P., Hamlin, R., Xuong, N.G. & Steitz, 'I'.A. (1985) Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 313,762-766.
  • 19. Bccse, I..S., Derbyshire, V. & Steitz, T.A. (1993) Structure of DNA polymerase 1 Klenow fragment bound to duplex DNA. Science 260, 352-355.
  • 20. Beese, L.S., Friedman. J.M. & Steitz, T.A. (1993) Crystal structures of the Klenow fragment of DNA polymerase I complexed with deoxyribo- nucleoside triphosphate and pyrophosphate. Biochemistry 32,14095-14101.
  • 21. Pelletier, H., Sawaya, M.R., Kumar, A., Wilson, S.H. & Kraut, J. (1994) Structures of ternary complexes of rat DNA polymerase (i, a DNA template-primer, and ddCTP. Science 264, 1891-1903.
  • 22. Sawaya, M.R., Pelletier, H., Kumar, A., Wilson, S.H. & Kraut, J. (1994) Crystal structure of rat DNA polymerase p: evidence for a common polymerase mechanism. Science 264,1930-1935.
  • 23. I.indborg, B. (1992) Polymerase domains of human immunodeficiency virus type 1 reverse transcriptase and herpes simplex virus type I DNA polymerase: their predicted three-dimen­sional structures and some putative functions in comparison with L. coli DNA polymerase I. A critical survey. Antiviral Client. Chemother. 3, 223-241.
  • 24. Dong, Q., Copeland, VV.C. & Wang,T.S.-F. (1993) Mutational studies of human DNA polymerase a. Identification of residues critical for deoxv- nucleotide binding and misinsertion fidelity of DNA synthesis. /. Biol. Chem. 268,24163-24174.
  • 25. Bernad, A., Blanco, L. & Salas, M. (1990) Site- directed mutagenesis of the YCDTD5 amino- acid motif of the 029 DNA polvmerase. Cene 94, 45-51.
  • 26. Copeland, W.C. & Wang, T.S.-F. (1993) Muta­tional analysis of the human DNA polymerase a. The most conserved region in ct-like DNA polymerases is involved in metal-specific cata­lysis. /. Biol. Chem. 268,11028-11040.
  • 27. Blasco, M.A., Lazaro, J.M., Blanco, L. & Salas, M. (1993) <>29 DNA polymerase active site. The conserved amino acid motif "KxaNSxYG" is involved in template-primer binding and dNTP selection. /. Biol. Chem. 268,16763-16770.
  • 28. Blasco, M.A., Lazaro,J.M., Bernad, A., Blanco, I.. & Salas, M. (1992) <>29 DNA polymerase active site. Mutants in conserved residues Tyr2^4 and Tyr390 are affected in dNTP binding. /. Biol. Chem. 267,19427-19434.
  • 29. Ta lanía n,R., Focher, F., Brown, N., Hiibscher, U., Khan, N. & Wright, G. (1990) DNA polymerase delta: A target for selective inhibitor design; in Molecular Aspects of Chemotherapy (Borowski, H. & Shugar, D., eds.) pp. 105-118, Pergamon Press, Elmford, New York.
  • 30. Jansons, J., Verri, A., Focher, F., Stattel, J. & Wright, G.F. (1996) Synthesis and DNA polymerase inhibition by .\r2-(p-w-octylphe- nyl)-2'-deoxyguanosine 5'-triphosphate. Nuc­leoides. Nucleoides 15,669-682.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-b7734bb1-fa0c-417e-9ae5-ab7433dfc3b1
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