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2004 | 13 | 3 |

Tytuł artykułu

Rapid DNA extraction for screening soil filamentous fungi using PCR amplification

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
A simple and rapid procedure for efficiently isolating fungi DNA suitable for use as a template for PCR amplification and other molecular assays is described. The main advantages of the method are: (1) the mycelium is directly recovered from Petri-dish cultures; (2) the technique is rapid and relatively easy to perform , and (3) it allows for processing of around 50 samples during a single day; (4) it is inexpensive; (5) the quality and quantity of DNA obtained are suitable for molecular assays; (6) it can be applied to filamentous fungi from soil as well as from a fungi from other environmental sources; and (7) it does not require the use of expensive and specialized equipment or hazardous reagents.

Wydawca

-

Rocznik

Tom

13

Numer

3

Opis fizyczny

p.315-318,fig.,ref.

Twórcy

autor
  • Institute for Ecology of Industrial Areas, Kossutha 6, 40-844 Katowice, Poland
autor
autor
autor
autor

Bibliografia

  • 1. SAMBROOK J., FRITSCH E.F., MANIATIS T.: Molecular cloning: A laboratory manual., 2nd ed. Cold Spring Harbor Laboratory Cold Spring Harbor, NY, 1989.
  • 2. VAN BURIK J.A., SCHRECKHISE R.W., WHITE T.C., BOWDEN R.A., MYERSON D.: Comparison of six extraction techniques for isolation of DNA from filamentous fungi. Med.Mycol. 36, 299, 1998.
  • 3. MADIGAN M.T., MARTINKO J.M., PARKER J.: Biology of microorganisms., 9th ed. by T.D. Brock, Prentice Hall Upper Saddle River, NJ 07458, 2000.
  • 4. STEFAN R.J., ATLAS R.M.: Polymerase chain reaction: Applications in Environmental Microbiology. Annu.Rev.Microbiol. 45, 137, 1991.
  • 5. HAUGLAND R.A., HECKMAN J.L., WYMER L.J.: Evaluation of different methods for the extraction of DNA from fungal conidia by quantitative competitive PCR analysis. J.Microbiol.Methods 37, 165, 1999.
  • 6. AL-SAMARRAI T.H., SCHMID J.: A simple method for extraction of fungal genomic DNA. Lett.Appl.Microbiol. 30, 53, 2000.
  • 7. LECELLIER G., SILAR P.: Rapid methods for nucleic acids extraction from Petri dish-grown mycelia. Curr.Genet. 25, 122, 1994.
  • 8. GRIFFIN D.W., KELLOGG C.A., PEAK K.K., SHIN E.A.: A rapid and efficient assay for extracting DNA from fungi. Lett.Appl.Microbiol. 34, 210, 2002.
  • 9. MANIAN S., SREENIVASAPRASAD S., MILLS P.R.: DNA extraction method for PCR in mycorrhizal fungi. Lett.Appl.Microbiol. 33, 307, 2001.
  • 10. AKADA R., MURAKANE T., NISHIZAWA Y.: DNA extraction method for screening yeast clones by PCR. Biotechniques 28, 668, 2000.
  • 11. Bioremediation of petroleum hydrocarbon-contaminated soils. Comprehensive Report, IETU, Savannah River Technology Center, Lawrence Berkely National Laboratory, Institute for International Cooperative Environmental Research, Florida State University, 1999.
  • 12. TSAI Y.-L., OLSON B.H.: Rapid method for direct extraction of DNA from soil and sediments. Appl.Environ.Microbiol. 56, 1070, 1991.
  • 13. FURLONG M.A., SINGLETON D.R., COLEMAN D.C., WHITMAN W.B.: Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl.Environ.Microbiol. 68, 1265, 2002.
  • 14. http://plantibio.berkeley.edu/-burns/primers.htm
  • 15. CASSAGO A., PANEPUCCI R.A., TORTELLA BAIAO A.M., HENRIQUE-SILVA F.: Cellophane based mini-prep method for DNA extraction from the filamentous fungus Trichoderma reesei. BMC Microbiol. 2, 1, 2002.
  • 16. LIU D., COLOE S., BAIRD R., PEDERSON J.: Rapid mini-preparation of fungal DNA for PCR. J.Clin.Microbiol. 38, 471, 2000.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-058387c0-6694-4a89-b5ff-594afef9f525
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