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2014 | 32 | 3 |

Tytuł artykułu

Development of cost-effective tetra-ARMS PCR for detection of FecB genotype in sheep

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The FecB gene has been shown to be crucial in reproduction in many sheep breeds. It is a single nucleotide polymorphism (SNP) located in the bone morphogenetic protein receptor IB (BMPRIB)gene. The current methods for genotyping the FecB mutation are either slow and laborious or expensive. In this report, a single-step amplification approach suitable for FecB genotyping method is described. Multiplex PCR was performed with four primers on the basis of tetraprimer amplification refractory mutation system PCR (tetra-primer ARMS PCR), then three FecB genotypes can be detected after electrophoresis. Genotyping results of the proposed multiplex PCR occurred to be in complete accordance with forced PCR-RFLP of all samples. It is a rapid and simple method for detection of FecB in a larger number of samples, and is suitable for other SNPs detection with specific primers even in most “low-tech” laboratories.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

32

Numer

3

Opis fizyczny

p.229-237,fig.,ref

Twórcy

autor
  • College of Life Sciences, China Jiliang University, Zhejiang Provincial Key Laboratory of Biometrology and Inspection and Quarantine, Institute of Plant Environmental Biology and Measurement Technology, Hangzhou 310018, China
autor
  • The Key Sheep Breeding and Reproduction Biotechnology Laboratory of Xinjiang Production and Construction Group, Research Institute of Animal Husbandry and Veterinary, Xinjiang Agricultural Reclamation Academy, Shihezi 832000, China
autor
  • The Key Sheep Breeding and Reproduction Biotechnology Laboratory of Xinjiang Production and Construction Group, Research Institute of Animal Husbandry and Veterinary, Xinjiang Agricultural Reclamation Academy, Shihezi 832000, China
autor
  • The Key Sheep Breeding and Reproduction Biotechnology Laboratory of Xinjiang Production and Construction Group, Research Institute of Animal Husbandry and Veterinary, Xinjiang Agricultural Reclamation Academy, Shihezi 832000, China
autor
  • The Key Sheep Breeding and Reproduction Biotechnology Laboratory of Xinjiang Production and Construction Group, Research Institute of Animal Husbandry and Veterinary, Xinjiang Agricultural Reclamation Academy, Shihezi 832000, China
autor
  • College of Life Sciences, China Jiliang University, Zhejiang Provincial Key Laboratory of Biometrology and Inspection and Quarantine, Institute of Plant Environmental Biology and Measurement Technology, Hangzhou 310018, China
autor
  • College of Life Sciences, China Jiliang University, Zhejiang Provincial Key Laboratory of Biometrology and Inspection and Quarantine, Institute of Plant Environmental Biology and Measurement Technology, Hangzhou 310018, China

Bibliografia

  • Abdoli R., Zamani P., Deljou A., Rezvan H., 2013 − Association of BPR-1B and GDF9 genes polymorphisms and secondary protein structure changes with reproduction traits in Mehraban ewes. Gene 524(2), 296-303.
  • Baris I., Etlik O., Koksal V., Arican -Baris S.T., 2010 − Rapid diagnosis of spinal muscular atrophy using tetra-primer ARMS PCR assay: simultaneous detection of SMN1 and SMN2 deletion.Molecular and Cellular Probes 24, 138-141.
  • Davis G.H., Galloway S.M., Ross L.K., Gregan S.M., Ward G., Nimbkar B.V.,Ghalsasi P.M, Nimbkar C., Gray G.D., Inounu I., Tiesnamurti B., Martyniuk E., Eythorsdottir E., Mulsant P., Lecerf F., Hanrahan J.P., Bradford G.E.,Wilson T., 2002 − DNA tests in prolific sheep from eight countries provide new evidence on origin of the Booroola (FecB) mutation. Biology of Reproduction 66, 1869-1874.
  • Davis G.H., 2005 − Major genes affecting ovulation rate in sheep. Genetics Selection Evolution 37, S11-23.
  • Etlik O., Koksal V., Arican -Baris S.T., Baris I., 2011 − Development and validation of a cost-effective in-house method, tetra-primer ARMS PCR assay, in genotyping of seven clinically important point mutations. Molecular and Cellular Probes 25, 177-181.
  • Ganai T.A., Misra S.S., Shabir M., 2012 − Polymorphism analysis of BMPR1B gene by forced RFLP and PCR-SSCP techniques and expression of the mutation in introgressed sheep. Tropical Animal Health and Production 44, 277-83.
  • GUAN F., LIU S.R., SHI G.Q., ANG L.G., 2007 − Polymorphism of FecB Gene in nine Sheep Breeds or Strains and Its Effects on Litter Size, Lamb Growth and Development. Animal Reproduction Science 99, 44-52.
  • Gootwine E., Rozov A., Bor A., Reicher S., 2006 − Carrying the FecB (Booroola) mutation is associated with lower birth weight and slower post-weaning growth rate for lambs, as well as a lighter mature bodyweight for ewes. Reproduction Fertility and Development 18, 433-437.
  • Lajin B., Alachkar A., Sakur A.A., 2013 − Betaine significantly improves multiplex tetraprimer ARMS-PCR methods. Molecular Biotechnology 54, 977-982.
  • Lajin B., Alachkar A., Sakur A.A., 2012 − Triplex tetra-primer ARMS-PCR method for the simultaneous detection of MTHFR c.677C>T and c.1298A>C, and MTRR c.66A>G polymorphisms of the folate-homocysteine metabolic pathway. Molecular and Cellular Probes 26, 16-20.
  • Mulsant P., Lecerf F., Fabre S., Schibler L., Monget P., Lanneluc I., Pisselet C., Riquet J., Monniaux D., Callebaut I., Cribiu E., Thimonier J., Teyssier J.,Bodin L., Cognié Y., Chitour N., Elsen J.M., 2001 − Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Merino ewes. Proceedings of The National Academy of Sciences of the United States of America 98, 5104-5109.
  • Roy J., Polley S., De S., Mukherjee A., Batabyal S., Pan S., Brahma B., Datta T,K., Goswami S.L., 2011 − Polymorphism of fecundity genes (FecB, FecX, and FecG) in the Indian Bonpala sheep. Animal Biotechnology 22, 151-162.
  • Souza C.J., Macdougal C., Campbell B.K., Mcneilly A.S., Baird D.T. 2001 − The Booroola (FecB) phenotype is associated with a mutation in the bone morphogenetic receptor type 1B (BMPR-1B) gene. Journal of Endocrinology 169, R1-6.
  • Wilson T., Wu X., Juengel J.L., Ross I.K., Lumsden J.M., Lord E.A., Dodds K.G.,Walling G.A., McEwan J.C., O’Connell A.R., McNatty K.P., Montgomery G.W.,2001 − Highly prolific Booroola sheep have a mutation in the intracellular kinase domain of bone morphogenetic protein IB receptor (ALK-6) that is expressed in both oocytes and granuloma cells.Biology of Reproduction 64, 1225-1235.
  • Yan Z.Q., Tong Q., Wang F., Wu P.C., Yang S.L., Gong Y., 2002 − Use of a rapid mismatch PCR method to detect gyrA and parC mutations in ciprofloxacin-resistant clinical isolates of Escherichia coli. Journal of Antimicrobial Chemotherapy 49, 549-552.
  • Yan Z.Q., Yang S.L., Gong Y., 2003 − Use of PCR related methods in detection of gene mutation.Hereditas (Beijing) 25, 198-200.
  • Ye S., Dhillon S., Ke X., Collins A.R., Day I.N., 2001 − An efficient procedure for genotyping single nucleotide polymorphisms. Nucleic Acids Research 29, E88-8.
  • YE, S., Humphries S., Green F., 1992 − Allele specific amplification by tetra-primer PCR.Nucleic Acids Research 5,1152.
  • Zhang C., Liu Y., Ring B.Z., Nie K., Yang M., Wang M., Shen H., Wu X., Ma X., 2013 − A Novel Multiplex Tetra-Primer ARMS-PCR for the Simultaneous Genotyping of Six Single Nucleotide Polymorphisms Associated with Female Cancers. PLoS ONE 8, e62126.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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