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2013 | 62 | 4 |

Tytuł artykułu

Application of a real-time PCR method for Salmonella spp., Escherichia coli, Staphylococcus aureus and Clostridium perfringens detection in water samples

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The diagnostic assessment of water sanitary state is based mainly on the cultivation of bacteria retained on membrane filters. However classical microbiology methods have a lot of disadvantages. More and more frequently, rapid detection and identification of pathogens present in water is based on molecular biology techniques. The aim of this study was to determine the effectiveness and usefulness of a real-time PCR method, when compared to the recommended bacteria culture method, in diagnostics of pathogens in water samples. The research concerned the detection and identification of main sanitary indicators of water such as: Salmonella spp., Escherichia coli, Staphylococcus aureus and Clostridium perfringens. The analyses were conducted in water samples contaminated with the reference material (the aforementioned bacteria) and real environmental samples, which were examined for the presence of nucleic acid of: Salmonella spp., E. coli, S. aureus and C. perfringens using a real-time PCR method.

Wydawca

-

Rocznik

Tom

62

Numer

4

Opis fizyczny

p.439-443,ref.

Twórcy

  • Provincial Sanitary and Epidemiological Station in Katowice, Raciborska 39, 40-957 Katowice, Poland
  • Provincial Sanitary and Epidemiological Station in Katowice, Raciborska 39, 40-957 Katowice, Poland
autor
  • Provincial Sanitary and Epidemiological Station in Katowice, Raciborska 39, 40-957 Katowice, Poland
autor
  • Medical University of Silesia in Katowice, Division of Laboratory Medicine in Sosnowiec, Sosnowiec, Poland
autor
  • Medical University of Silesia in Katowice, Division of Laboratory Medicine in Sosnowiec, Sosnowiec, Poland
autor
  • Medical University of Silesia in Katowice, Division of Laboratory Medicine in Sosnowiec, Sosnowiec, Poland

Bibliografia

  • Agudelo R.M., F. Codony, B. Adrados, M. Fittipaldi, G. Peñuela and J. Morato. 2010. Monitoring bacterial faecal contamination in waters using multiplex real-time PCR assay for Bacteroides spp. and faecal enterococci. Water SA. 36: 126-132.
  • Ahmed W, F. Huygens, A. Goonetilleke and T. Gardner. 2008. Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia. Appl. Environ. Microbiol. 74: 5490-5496.
  • Beneduce L., D. Fiocco and G. Spano. 2007. Development of PCR-based molecular tools for the detection of emerging food- ad water-borne pathogenic bacteria, pp. 569-576. In: Méndez-Vilas A. (ed). Communicating Current Research and Educational Topics and Trends in Applied Microbiology. Formatex, Badajoz.
  • Bien J., O. Sokolova and P. Bozko. 2011. Characterization of virulence factors of Staphylococcus aureus: novel function of known virulence factors that are implicated in activation of airway epithelial proinflammatory response. J. Pathog. 2011: 1-13.
  • Cavalcanti M.T.H., T. Porto, A.L.F. Porto, I.V. Brandi, J.L. Lima Filho and A. Pessoa Jr. 2004. Large scale purification of Clostridium perfringens toxins: a review. Braz. J. Pharm. Sci. 40: 151-164.
  • Cennimo D.J., H. Koo, J.A. Mohamed, D.B. Huang and T. Chiang. 2007. Enteroaggregative Escherichia coli: a review of trends, diagnosis and treatment. Inf. Med. 24: 101-110.
  • Chattaway M.A., T. Dallman, I.N. Okeke and J. Wain. 2011. Enteroaggregative E. coli O104 from an outbreak of HUS in Germany 2011, could it happen again? J. Infect. Dev. Ctries. 5: 425-436.
  • Dixit U. and R. Shaker. 2009. Detection of water-borne pathogens: culture plate to genomics. Indian J. Sci. Technol. 2: 59-71.
  • Dufour A.P. and G.N. Stelma Jr. 2010. Real-time monitoring technologies for indicator bacteria and pathogens in shellfish and shellfish harvesting waters, pp. 109-120. In: Rees G., K. Pond, D. Kay, J. Bartram and J. Santo Domingo (eds). Safe Management of Shellfish and Harvest Waters. IWA Publishing, London.
  • Fey A., S. Eichler, S. Flavier, R. Christen, M.G. Höfle and C.A. Guzmán. 2004. Establishment of real-time PCR-based approach for accurate quantification of bacterial RNA targets in water, using Salmonella as a model organism. Appl. Environ. Microbiol. 70: 1-6.
  • Heid C.A., J. Stevens, K.J. Livak and P.M. Williams. 1996. Real time quantitative PCR. Genome Res. 6: 986-994.
  • Ibekwe A.M. and CM. Grieve. 2003. Detection and quantification of Escherichia coli 0157:H7 in environmental samples by real-time PCR. J. Appl. Microbiol. 94: 421-431.
  • Kacprzak M., K. Fijałkowska and A. Rorat. 2012. Application of real-time PCR method in the diagnosis of pathogens in sewage treatment process (in Polish). Acta Agrophysica. 19: 319-327.
  • Kądzielska J., P. Obuch-Woszczatyński, H. Pituch and G. Młynarczyk. 2012. Clostridium perfringens as the etiological agent of antibiotic associated diarrhoea (in Polish). Post. Mikrobiol. 51: 17-25.
  • Kaur P., A. Chakraborti and A. Asea. 2010. Enteroaggregative Escherichia coli: an emerging enteric food borne pathogen. Interdisciplinary Perspectives on Infectious Diseases. 2010: 1-10.
  • Lee D.Y., K. Shannon and L.A. Beaudette. 2006. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR. J. Microbiol. Methods. 65: 453-467.
  • Noble R.T. and S.B. Weisberg. 2005. A review of technologies for rapid detection of bacteria in recreational waters. J. Water Health. 3: 381-392.
  • Ohl M.E. and S.I. Miller. 2001. Salmonella: a model for bacterial pathogenesis. Ann. Rev. Med. 52: 259-274.
  • Rinttilä T., A. Lyra, L. Krogius-Kurikka and A. Palva. 2011. Realtime PCR analysis of enteric pathogens from fecal samples of irritable bowel syndrome subjects. Gut. Pathog. 3: 1-9.
  • Rogers S.W., M. Donnelly, L. Peed, C.A. Kelty, S. Mondal, Z. Zhong and O.C. Shanks. 2011. Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils. Appl. Environ. Microbiol. 77: 4839-4848.
  • Smith C.J. and A.M. Osborn. 2009. Advantages and limitations of quantitative PCR(Q-PCR)-based approaches in microbial ecology. FEMS Microbiol. Ecol. 67: 6-20.
  • Toze S. 1999. PCR and the detection of microbial pathogens in water and wastewater. Wat. Res. 33: 3545-3556.
  • Valasek M.A. and J.J. Repa. 2005. The power of real-time PCR. Adv. Physiol. Educ. 29: 151-159.
  • Wong M.L. and J.F. Medrano. 2005. Real-time PCR for mRNA quantitation. Biotechniques. 39: 1-11.
  • Yang S., S. Lin, G.D. Kelen, T.C. Quinn, J.D. Dick, C.A. Gaydos, R.E. Rothman. 2002. Quantitative multiprobe PCR assay for simultaneous detection and identification to species level of bacterial pathogens. J. Clin. Microbiol. 40: 3449-3454.

Typ dokumentu

Bibliografia

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Identyfikator YADDA

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