Phylogenetic characterization of Canine Parvovirus VP2 partial sequences from symptomatic dogs samples

• Autorzy: Zienius D. , Lelesius R. , Kovaliauskis H. , Stankevicius A. , Salomskas A.
• Języki publikacji: EN

Abstrakty

EN

The aim of the present study was to detect canine parvovirus (CPV) from faecal samples of clinically ill domestic dogs by polymerase chain reaction (PCR) followed by VP2 gene partial sequencing and molecular characterization of circulating strains in Lithuania. Eleven clinically and antigen-tested positive dog faecal samples, collected during the period of 2014-2015, were investigated by using PCR. The phylogenetic investigations indicated that the Lithuanian CPV VP2 partial sequences (3025-3706 cds) were closely related and showed 99.0-99.9% identity. All Lithuanian sequences were associated with one phylogroup, but grouped in different clusters. Ten of investigated Lithuanian CPV VP2 sequences were closely associated with CPV 2a antigenic variant (99.4% nt identity). Five CPV VP2 sequences from Lithuania were related to CPV-2a, but were rather divergent (6.8 nt differences). Only one CPV VP2 sequence from Lithuania was associated (99.3% nt identity) with CPV-2b VP2 sequences from France, Italy, USA and Korea. The four of eleven investigated Lithuanian dogs with CPV infection symptoms were vaccinated with CPV-2 vaccine, but their VP2 sequences were phylogenetically distantly associated with CPV vaccine strains VP2 sequences (11.5-15.8 nt differences). Ten Lithuanian CPV VP2 sequences had monophyletic relations among the close geographically associated samples, but five of them were rather divergent (1.0% less sequence similarity). The one Lithuanian CPV VP2 sequence was closely related with CPV-2b antigenic variant. All the Lithuanian CPV VP2 partial sequences were conservative and phylogenetically low associated with most commonly used CPV vaccine strains.

• Wydawca: -
• Czasopismo: Polish Journal of Veterinary Sciences
• Rocznik: 2016
• Tom: 19
• Numer: 1
• Opis fizyczny: p.187-196,fig.,ref.

Twórcy

autor

Zienius D.

• Institute of Microbiology and Virology, Veterinary Academy, Lithuanian University of Health Sciences, Tilzes 18, 47181 Kaunas, Lithuania

autor

Lelesius R.

• Institute of Microbiology and Virology, Veterinary Academy, Lithuanian University of Health Sciences, Tilzes 18, 47181 Kaunas, Lithuania

autor

Kovaliauskis H.

• Department of Infectious Diseases, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania

autor

Stankevicius A.

• Department of Anatomy and Physiology, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania

autor

Salomskas A.

• Department of Infectious Diseases, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania

Bibliografia

• Battilani M, Ciulli S, Tisato E, Prosperi S (2002) Genetic analysis of canine parvovirus isolates (CPV-2) from dogs in Italy. Virus Res 83: 149-157.
• Battilani M, Scagliarini A, Tisato E, Turilli C, Jacoboni I, Casadio R, Prosperi S (2001) Analysis of canine parvovirus sequences from wolves and dogs isolated in Italy. J Gen Virol 82: 1555-1560.
• Chinchkar SR, Mohana Subramanian B, Hanumantha Rao N, Rangarajan PN, Thiagarajan D, Srinivasan VA (2006) Analysis of VP2 gene sequences of canine parvovirus isolates in India. Arch Virol 151: 1881-1887.
• Clegg SR, Coyne KP, Parker J, Dawson S, Godsall SA, Pinchbeck G, Cripps PJ, Gaskell RM, Radford AD (2011) Molecular Epidemiology and Phylogeny Reveal Complex Spatial Dynamics in Areas Where Canine Parvovirus Is Endemic. J Virol 85: 7892-7899.
• Cotmore SF, Agbandje-McKenna M, Chiorini JA, Mukha DV, Pintel DJ, Qiu J, Soderlund-Venermo M, Tattersall P, Tijssen P, Gatherer D, Davison AJ (2014) The family Parvoviridae. Arch Virol 159: 1239-1247.
• Decaro N, Desario C, Billi M, Mari V, Elia G, Cavalli A, Martella V, Buonavoglia C (2011) Western European epidemiological survey for parvovirus and coronavirus infections in dogs. Vet J 187: 195-199.
• Decaro N, Desario C, Elia G, Campolo M, Lorusso A, Mari V, Martella V, Buonavoglia C (2007) Occurrence of severe gastroenteritis in pups after canine parvovirus vaccine administration: a clinical and laboratory diagnostic dilemma. Vaccine 25: 1161-1166.
• Decaro N, Desario C, Elia G, Martella V, Mari V, Lavazza A, Nardi M, Buonavoglia C (2008a) Evidence for immunisation failure in vaccinated adult dogs infected with canine parvovirus type 2c. New Microbiol 31: 125-130.
• Decaro N, Desario C, Miccolupo A, Campolo M, Parisi A, Martella V, Amorisco F, Lucente MS, Lavazza A, Buonavoglia C (2008b) Genetic analysis of feline panleukopenia viruses from cats with gastroenteritis. J Gen Virol 89: 2290-2298.
• Decaro N, Desario C, Parisi A, Martella V, Lorusso A, Miccolupo A, Mari V, Colaianni ML, Cavalli A, Di Trani L, Buonavoglia C (2009) Genetic analysis of canine parvovirus type 2c. Virology 385: 5-10.
• Decaro N, Buonavoglia D, Desario C, Amorisco F, Colaianni ML, Parisi A, Terio V, Elia G, Lucente MS, Cavalli A, Martella V, Buonavoglia C (2010) Characterisation of canine parvovirus strains isolated from cats with feline panleukopenia. Res Vet Sci 89: 275-278.
• Decaro N, Elia G, Campolo M, Desario C, Lucente MS, Bellacicco AL, Buonavoglia C (2005a) New approaches for the molecular characterization of canine parvovirus type 2 strains. J Vet Med 52: 316-319.
• Decaro N, Elia G, Martella V, Desario C, Campolo M, Trani L, Tarsitano E, Tempesta M, Buonavoglia C (2005b) A real-time PCR assay for rapid detection and quantitation of canine parvovirus type 2 in the feces of dogs. Vet Microbiol 105: 19-28.
• Desario C, Decaro N, Campolo M, Cavalli A, Cirone F, Elia G, Martella V, Lorusso E, Camero M, Buonavoglia C (2005) Canine parvovirus infection: which diagnostic test for virus? J Virol Methods 126: 179-185.
• Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
• Filipov C, Decaro N, Desario C, Amorisco F, Sciarretta R, Buonavoglia C (2011) Canine parvovirus epidemiology in Bulgaria. J Vet Diagn Invest 23: 152-154.
• Glickman LT, Domanski LM, Patronek GJ, Visintainer F (1985) Breed-related risk factors for canine parvovirus enteritis. J Am Vet Med Assoc 187: 589-594.
• Grigonis A, Macijauskas V, Zamokas G (2002) Examination of liver functions in dogs with parvovirus enteritis. Vet zootech-lith 17: 72-77.
• Hoelzer K, Parrish CR (2010) The emergence of parvoviruses of carnivores. Vet Res 41: 39.
• Hoelzer K, Shackelton LA, Parrish CR, Holmes EC (2008) Phylogenetic analysis reveals the emergence, evolution and dispersal of carnivore parvoviruses. J Gen Virol 89: 2280-2289.
• Hong C, Decaro N, Desario C, Tanner P, Pardo MC, Sanchez S, Buonavoglia C, Saliki JT (2007) Occurrence of canine parvovirus type 2c in the United States. J Vet Diagn Invest 19: 535-539.
• Hueffer K, Parker JS, Weichert WS, Geisel RE, Sgro JY, Parrish CR (2003) The natural host range shift and sub subsequent evolution of canine parvovirus resulted from virus-specific binding to the canine transferrin receptor. J Virol 77: 1718-1726.
• Ikeda Y, Mochizuki M, Naito R, Nakamura K, Miyazawa T, Mikami T, Takahashi E (2000) Predominance of canine parvovirus (CPV) in unvaccinated cat populations and emergence of new antigenic types of CPVs in cats. Virology 278: 13-19.
• Jeoung SY, Ahn SJ, Kim D (2008) Genetic analysis of VP2 gene of canine parvovirus isolates in Korea. J Vet Med Sci 70: 719-722.
• Kang BK, Song DS, Lee CS, Jung KI, Park SJ, Kim EM, Park BK (2008) Prevalence and genetic characterization of canine parvoviruses in Korea. Virus Genes 36: 127-133.
• Kumar M, Chidri S, Nandi S (2011) A sensitive method to detect canine parvoviral DNA in faecal samples by nested polymerase chain reaction. Indian J Biotechnology 10: 183-187.
• Martella V, Decaro N, Buonavoglia C (2006) Evolution of CPV-2 and implication for antigenic/genetic characterization. Virus Genes 33: 11-13.
• Muz D, Oguzoglu TC, Timurkan MO, Akin H (2012) Characterization of the partial VP2 gene region of canine parvoviruses in domestic cats from Turkey. Virus Genes 44(2):301-308.
• Nandi S, Kumar M (2010) Canine parvovirus: current perspective. Indian J Virol 21: 31-44.
• Ntafis V, Xylouri E, Kalli I, Desario C, Mari V, Decaro N, Buonavoglia C (2010) Characterization of Canine parvovirus 2 variants circulating in Greece. J Vet Diagn Invest 22: 737-740.
• Parrish CR, Have P, Foreyt WJ, Evermann JF, Senda M, Carmichael LE (1988) The global spread and replacement of canine parvovirus strains. J Gen Virol 69: 1111-1116.
• Parrish CR, O’Connell PH, Evermann JF, Carmichael LE (1985) Natural variation of canine parvovirus. Science 230: 1046-1048.
• Parrish CR (1991) Mapping specific functions in the capsid structure of canine parvovirus and feline panleukopenia virus using infectious plasmid clones. Virology 183: 195-205.
• Parrish CR, Aquadro CF, Carmichael LE (1988) Canine host range and a specific epitope map along with variant sequences in the capsid protein gene of canine parvovirus and related feline, mink, and raccoon parvoviruses. Virology 166: 293-307.
• Perez R, Francia L, Romero V, Maya L, Lopez I, Hernandez M (2007) First detection of canine parvovirus type 2c in South America. Vet Microbiol 124: 147-152.
• Phromnoi S, Sirinarumitr K, Sirinarumitr T (2010) Sequence analysis of VP2 gene of canine parvovirus isolates in Thailand. Virus Genes 41: 23-29.
• Pinto LD, Streck AF, Goncalves KR, Souza CK, Corbellini AO, Corbellini LG, Canal CW (2012) Typing of canine parvovirus strains circulating in Brazil between 2008 and 2010. Virus Res 165: 29-33.
• Puentes R, Eliopulos N, Perez R, Franco G, Sosa K, Bianchi P, Furtado A, Hubner SO, Esteves PA (2012) Isolation and characterization of canine parvovirus type 2c (CPV-2c) from symptomatic puppies. Braz J Microbiol 43: 1005-1009.
• Saitou N, Nei M (1987) The Neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
• Shackelton LA, Parrish CR, Truyen U, Holmes EC (2005) High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc Natl Acad Sci USA 102: 379-384.
• Siegl G, Bates RC, Berns KI, Carter BJ, Kelly DC, Kurstak E, Tattersall P (1985) Characteristics and taxonomy of Parvoviridae. Intervirology 23: 61-73.
• Spibey N, Greenwood NM, Sutton D, Chalmers WS, Tarpey I (2008) Canine parvovirus type 2 vaccine protects against virulent challenge with type 2c virus. Vet Microbiol 128: 48-55.
• Stankevicius A, Salomskas A (1998) Epizootic pecularities of parvovirus infection in Lithuanian dog population. Vet zootech-lith 5: 89-94.
• Sutton D, Vinberg C, Gustafsson A, Pearce J, Greenwood N (2013) Canine parvovirus type 2c identified from an outbreak of severe gastroenteritis in a litter in Sweden. Acta Vet Scand 55: 64.
• Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526.
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725-2729.
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The CLUSTAL–X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
• Truyen U (1999) Emergence and recent evolution of canine parvovirus. Vet Microbiol 69: 47-50.
• Truyen U (2006) Evolution of canine parvovirus-a need for new vaccines? Vet Microbiol 117: 9-13.
• Truyen U, Gruenberg A, Chang SF, Obermaier B, Veijalainen P, Parrish CR (1995) Evolution of the feline-subgroup of parvoviruses and the control of canine host range in vivo. J Virol 69: 4702-4710.
• Wang HC, Chen WD, Lin SL, Chan JP, Wong ML (2005) Phylogenetic analysis of canine parvovirus VP2 gene in Taiwan. Virus Genes 31: 171-174.
• Yoon SH, Jeong W, Kim HJ, An DJ (2009) Molecular insights into the phylogeny of canine parvo virus 2(CPV-2) with emphasis on Korean isolates: a Bayesian approach. Arch Virol 154: 1353-1360.

Identyfikatory

DOI

10.1515/pjvs-2016-0023