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2007 | 29 | 1 |

Tytuł artykułu

Isolation and bioinformatics analyses of a COR413-like gene from Gossypium barbadense

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
A novel cDNA clone encoding a COR413- like gene was isolated by suppression subtraction hybridization and cDNA library screening from seaisland cotton (Gossypium barbadense). This gene (designated as GbCOR413, Accession number: AY761065) has a total length of 893 bp with an open reading frame of 600 bp, encoding a predicated polypeptide of 200 amino acids with a molecular weight of 22.74 kDa and a predicated pI of 9.2. Bioinformatics analyses revealed that this gene belonged to a novel stress-regulated multi-spanning transmembrane protein family without signal peptide. By means of semiquantities RT-PCR analysis, the expression of GbCOR413 under short-term cold treatment at 4℃, water submergence and abscic acid treatment was investigated. Our studies suggested that the cloned gene was a new member of COR gene family which was slowly responsive to cold stress in cotton.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

29

Numer

1

Opis fizyczny

p.1-9,fig.,ref.

Twórcy

autor
  • Plant Genomics Research Center, Mianyang Normal College, Mianyang, Sichuan 621000, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Environmental Sciences Department, School of Chemical Engineering, Tsinghua University, 100800 Beijing, China
autor
  • Plant Genomics Research Center, Mianyang Normal College, Mianyang, Sichuan 621000, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China
autor
  • Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology, Rand D Center, School of Agriculture and Biology, School of Life Science and Technology, Shanghai Jiaotong University, Shanghai 200030, China

Bibliografia

  • Altschul SF, Madden TL, Schäfer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST:a new generation of protein database search programs. Nucleic Acids Res 25:3381–3402
  • Artus NN, Uemura M, Steponkus PL, Gilmour SJ, Lin CT, Thomashow MF (1996) Constitutive expression of the cold-regulated Arabidopsis thaliana COR15a gene affects both chloroplast and protoplast freezing tolerance. Proc Natl Acad Sci USA 93:13404–13409
  • Bange MP, Milroy SP (2004) Impact of short-term exposure to cold night temperatures on early development of cotton (Gossypium hirsutum L.). Aust J Agric Res 55:655–664
  • Bannai H, Tamada Y, Maruyama O, Nakai K, Miyano S (2002) Extensive feature detection of N-terminal protein sorting signals. Bioinformatics 18:298–305
  • Barry AL, Gary M, Dmytro K, Paxton P, Randy DA, Holaday AS (2003) Transgenic overproduction of glutathione reductase does not protect cotton, Gossypium hirsutum (Malvaceae), from photo-inhibition during growth under chilling conditions. Amer J Botany 90:1400–1403
  • Blom N, Gammeltoft S, Brunak S (1999) Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 294:1351–1362
  • Breton G, Danyluk J, Charron JB, Sarhan F (2003) Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from Cereals and Arabidopsis. Plant Physiol 132:64–74
  • Combet C, Blanchet C, Geourjon C, Deléage G (2000) NPS@: Network protein sequence analysis. Trends Biochem Sci 25:147–150
  • Davidonis Gayle H, Johnson Ann S, Landivar Juan A, Fernandez Carlos J (2004) Cotton fiber quality is related to boll location and planting. Date Agron J 96:42–47
  • El-Zik KM (1980) The cotton plant fits growth and development. Western Cotton Production Conference Summary Proceedings, Fresno, CA, pp 18–21
  • Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300:1005–1016
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  • Galau GA, Bass HW, Hughes DW (1988) Restriction fragment length polymorphisms in diploid and allotetraploid Gossypium: assigning the late embryogenesis-abundant (Lea) alloalleles in G. hirsutum. Mol Gen Genet 211:305–314
  • Ghislain Breton, Jean Danyluk, Jean-Benoît Frenette Charron, Fathey Sarhan (2003) Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiol 13264–13274
  • Gipson JR (1986) Temperature effects on growth, development and fiber properties. In: Mauney JR, Stewart JM (eds) Cotton Physiology, Memphis, TN: Cotton Foundation, pp 47–56
  • Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567–580
  • Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105–132
  • Liakatas A, Roussopoulos D, Whittington WJ (1998) Controlled-temperature effects on cotton yield and fiber properties. J Agric Sci 130:463–471
  • Nakai K, Kanehisa M (1992) A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics 14:897–911
  • Nielsen H, Krogh A (1998) Prediction of signal peptides and signal anchors by a hidden Markov model. In: Glasgow J, Littlejohn T, Major F, Lathrop R, Sankoff D, Sensen C (eds) Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp 122–130
  • Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of cotton genomic DNA suitable for RFL P and PCR analysis. Plant Mol Biol Rep 11:122–127
  • Ramey HH (1986) Stress influence on fiber development. In: Mauney JR, Stewart JM (ed) Cotton Physiology, Memphis, TN, Cotton Foundation, pp 351–360
  • Roussopoulos D, Liakatas A, Whittington WJ (1998) Cotton responses to different light-temperature regimes. J Agric Sci 131:277–283
  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd ed, Cold-Spring Harbor Laboratory Press, Cold Spring harbor, New York
  • Sawan ZM, Hanna LI, Gad El Karim, McCuistion WL (2002) Relationships between climatic factors and flower and boll production in Egyptian cotton (Gossypium barbadense), Journal of Arid Environments 52:499–516
  • Steponkus PL, Uemura M, Joseph RA, Gilmour SJ, Thomashow MF (1998) Mode of action of the COR15a gene on the freezing tolerance of Arabidopsis thaliana Proc Natl Acad Sci USA 95:14570–14575
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Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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