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2017 | 73 | 05 |

Tytuł artykułu

Molecular identification and phylogenetic analysis of non-cytopathic bovine viral diarrhea virus isolate obtained from a local respiratory outbreak in Northern Turkey

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
In February 2016, a local respiratory disease outbreak with two fatalities was reported in Samsun, Turkey. A non-cytopathic bovine viral diarrhea virus (ncp-BVDV) was identified from the organ and leucocyte samples of dead juvenile heifers using RT-PCR with specific primers for the NS2/3 gene coding region. The NS2/3 gene of BVDV was sequenced and compared with other published sequences of BVDV. The sequences of our isolate which was named as Samsun TR, had 81-83% nucleotite (nt) identity for BVDV-1. Phylogenetic analysis revealed that Samsun-TR was closely related to LC089875 (Japan), AF526381 (China) and also shared 83% nucleotide(nt) identity with them. The NS2/3 gene sequence of Samsun-TR was deposited in the GenBank database with the accession number of KX428495.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

73

Numer

05

Opis fizyczny

p.284-288,fig.,ref.

Twórcy

autor
  • Deparment of Virology, Faculty of Veterinary Medicine, University of Ondokuz Mayis, Samsun, Turkey
autor
  • Deparment of Virology, Faculty of Veterinary Medicine, University of Ondokuz Mayis, Samsun, Turkey
autor
  • Deparment of Virology, Faculty of Veterinary Medicine, University of Ondokuz Mayis, Samsun, Turkey
  • Virology Laboratory, Samsun Veterinary Control Institute, Samsun, Turkey
autor
  • Virology Laboratory, Samsun Veterinary Control Institute, Samsun, Turkey
autor
  • Virology Laboratory, Samsun Veterinary Control Institute, Samsun, Turkey
autor
  • Virology Laboratory, Samsun Veterinary Control Institute, Samsun, Turkey
autor
  • Deparment of Virology, Faculty of Veterinary Medicine, University of Ondokuz Mayis, Samsun, Turkey
autor
  • Deparment of Virology, Faculty of Veterinary Medicine, University of Ondokuz Mayis, Samsun, Turkey

Bibliografia

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  • Booth R. E., Thomas C. J., El-Attar L. M., Gunn G., Brownlie J.: A phylogenetic analysis of bovine viral diarrhoea virus (BVDV) isolates from six different regions of the UK and links to animal movement data. Vet. Res. 2013, 44, (1):43. Doi: 10.1186/1297-9716-44-43.
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  • Gumusova S. O., Yazici Z., Albayrak H.: Pestivirus Seroprevalence in sheep populations from inland and coastal Zones in Turkey. Rev. Med. Vet. 2006, 157, 22-25.
  • Kameyama K. I., Sakoda Y., Matsuno K., Asako I., Tajiıma M., Nakamura S., Kida H.: Cleavage of the NS2-3 protein in the cells of cattle persistently infected with non-cytopathogenic bovine viral diarrhea virus. Microbiol. Immunol. 2008, 52, 277-282.
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  • Oguzoglu T. C., Muz D., Yilmaz V., Alkan F., Akca Y., Burgu I.: Molecular characterization of bovine virus diarrhea viruses species 2 (BVDV-2) from cattle in Turkey. Trop. Anim. Health Prod. 2010, 42, 1175-1180.
  • Oguzoglu T. C., Muz D., Yilmaz V., Tiımurkan M. O., Alkan F., Akca Y., Burgu I.: Molecular characteristics of bovine virus diarrhoea virus 1 isolates from Turkey: approaches for an eradication programme. Transbound. Emerg. Dis. 2012, 59, 303-310.
  • OIE: Border disease, [in:] Manual of Diagnostic Tests and Vaccines for Terrestrial Animals, 2008, chapter 2.7.1. Available: http://www.oie.int/manualof-diagnostic-tests-and-vaccines-for-terrestrial-animals Accessed 2011 Dec 25.
  • Ozkul A., Yesilbag K., Burgu I.: Comparison of four diagnostic techniques for detecting bovine virus diarrhoea virus (BVDV) in buffy coat samples after long-term storage. Turk J. Vet. Anim. Sci. 2002, 26, 1043-1048.
  • Sato A., Tateishi K., Shinohara M., Naoi Y., Shiokawa M., Aoki H., Ohmori K., Mizutani T., Shirai J., Nagai M.: Complete genome sequencing of bovine viral diarrhea virus 1, subgenotypes 1n and 1o. Genome Announc. 2016, 4 (1): E01744-15. Doi:10.1128/Genomea.01744-15.
  • Tutuncu H., Yazici Z.: Screening for persistently infected cattle with bovine viral diarrhea virus in small-scale family farms located in Samsun Province, Northern Turkey. JAPS 2016, 26, 291-293.
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  • Wılson D. J., Baldwin T. J., Kelly J. E., Wettere A. V., Hullinger G., Bunnell J.: Prevalence of bovine viral diarrhea virus in bovine samples from the intermountain West of the USA: Comparison between age, sex, breed and diagnostic methods. J. Vet. Sci. Tech. 2016, 7, 326. Doi:10.4172/2157-7579.1000326.
  • Yazici Z., Serdar M. S., Gumusova S. O., Albayrak H.: Molecular diagnosis and seroepidemiology of pestiviruses in sheep diagnosis and seroepidemiology. Vet. Arhiv. 2012, 82, 35-45.
  • Yesilbag K., Forster C., Barbara B. W., Yİlmaz Z., Alkan F., Ozkul A., Burgu I., Cedillo R. S., Jurgen T. H., Konig M.: Genetic heterogeneity of bovine viral diarrhoea virus (BVDV) isolates from Turkey: identification of a new subgroup in BVDV-1. Vet. Microbiol. 2008, 130, 258-267.
  • Yesilbag K., Forster C., Ozyigit M. O., Alpay G., Tuncer P., Thiel H. J., Konig M.: Characterisation of bovine viral diarrhoea virus (BVDV) isolates from an outbreak with haemorrhagic enteritis and severe pneumonia. Vet. Microbiol. 2014, 21, 169, 42-49. Doi: 10.1016/J.Vetmic.2013.12.005. Epub 2013 Dec 18.
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Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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