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2008 | 49 | 3 |

Tytuł artykułu

Verification of reference genes for relative quantification of gene expression by real-time reverse transcription PCR in the pig

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The aim of this study was to develop a set of reliable reference genes for quantification of mRNA expression in the pig. The mRNA expression stability in pig tissues was studied for 4 genes: EEF1A1, GAPDH, HPRT1 and TOP2B. The level of expression was characterized by Ct values for each gene and each tissue. By using the geNorm algorithm, the stability of the reference genes was determined in the diaphragm, heart, kidney, liver, lungs, longissimus muscle, and spleen. On the basis of this information, suitable reference genes can be selected for mRNA expression studies in relevant pig tissues.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

49

Numer

3

Opis fizyczny

p.263-265,ref.

Twórcy

autor
  • Department of Animal Morphology, Physiology and Genetics, Mendel University of Agriculture and Forestry, Brno, Czech Republic
autor
  • Department of Animal Morphology, Physiology and Genetics, Mendel University of Agriculture and Forestry, Brno, Czech Republic
autor
  • Department of Animal Morphology, Physiology and Genetics, Mendel University of Agriculture and Forestry, Brno, Czech Republic

Bibliografia

  • Erkens T, van Poucke M, Vandesompele J, Goossens K, van Zeveren A, Peelman LJ, 2006. Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGCIA. BMC Biotechnol 6: 41.
  • Hsiao LL, Dangond F, Yoshida T, Hong R, Jensen RV, Misra J, 2001. A compendium of gene expression in normal human tissues. Physiol Genomics 7: 97-104.
  • Lee S, Jo M, Lee J, Koh SS, Kim S, 2007. Identification of novel universal housekeeping genes by statistical analysis of microarray data. J Biochem Mol Biol 40: 226-231.
  • Murphy CL, Polak JM, 2002. Differentiating embryonic stem cells: GAPDH, but neither HPRT nor beta-tubulin is suitable as an internal standard for measuring RNA levels. Tissue Eng 8: 551-559.
  • Nygard AB, Jørgensen CB, Cirera S, Fredholm M, 2007. Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. BMC Mol Biol 8: 67.
  • Tsai S, Cassady JP, Freking BA, Nonneman DJ, Rohrer GA, Piedrahita JA, 2006. Annotation of the Affymetrix porcine genome microarray. Anim Genet 37: 423-424.
  • Vandesompele J, de Preter K, Pattyn F, Poppe B, van Roy N, de Paepe A, 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: 34.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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