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2004 | 09 | 4B |

Tytuł artykułu

Development of the single nucleotide polymorphism marker of the wheat Lr1 leaf rust resistance gene

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The range of publicly available data on plant nucleotide sequences opens a new possibility in the design of SNP assays. The purpose of this study was to identify point mutations in genomic sequences closely linked to the Lr1 leaf rust resistance gene, and to develop SNP markers based on primer extension (SNuPE) facilitating efficient marker-based selection procedures, e.g. the pyramiding of resistance genes. Studies were performed on the panel of 37 wheat cultivars, the set of 41 Thatcher near-isogenic lines of spring wheat and on the 21 individuals derived from doubled-haploid (DH) lines derived from 'Henika' (Lr1) x 'IPG-SW-14'. A minisequencing reaction run with Lr1_98F primer detected four genotypes (T, C+T, C and "null") in the set of all Triticum aestivum varieties tested. In this study, it turned out that the T allele is associated with the Lr1 gene in a wide genetic background.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

09

Numer

4B

Opis fizyczny

p.879-889,fig.,ref.

Twórcy

autor
  • Polonia University, Pulaskiego 4/6, 42-200 Czestochowa, Poland
autor
autor
autor
autor
autor

Bibliografia

  • 1. McIntosh, R.A., Hart, G.E., Devos, K.M., Gale, M.D. and Rogers, W.J. Catalogue of gene symbols for wheat. Proc. 9th Int. Wheat Genetic Symp. Saskatoon, Canada. 2-7 August. Univ. Saskatchewan. (2003) (http://wheat.pw.usda. gov/ggpages/wgc/98/).
  • 2. Dyck, P.L. and Samborski, D.J. Genetics of resistance to leaf rust in common wheat varieties Webster, Loros, Brevit, Carina, Malakoff and Centenario. Can. J. Genet. Cytol. 10 (1968) 7-17.
  • 3. McIntosh, R.A., Baker, E.P. and Driscoll, C.J. Cytogenetical studies in wheat. I. Monosomic analysis of leaf rust resistance in the cultivars Uruguay and Transfer. Aust. J. Biol. Sci. 18 (1965) 971-977.
  • 4. Feuillet, C., Messmer, M., Schachermayr, G. and Keller, B. Genetic and physical characterization of the LR1 leaf rust resistance locus in wheat (Triticum aestivum L.) Mol. Gen. Genet. 248 (1995) 553-562.
  • 5. Schachermayr, G., Feuillet, C. and Keller, B. Molecular markers for the detection of wheat leaf rust resistance gene Lr10 in diverse genetic background. Mol. Breed. 3 (1997) 65-74.
  • 6. Ling, H.-Q., Zhu, Y. and Keller, B. High-resolution mapping of the leaf rust disease resistance gene Lr1 in wheat and characterization of BAC clones from the Lr1 locus. Theor. Appl. Genet. 106 (2003) 875-882.
  • 7. Syvänen, A.C. From gel to chips: "minisequencing" primer extension for analysis of point mutations and single nucleotide polymorphisms. Hum. Mutat. 13 (1999) 1-10.
  • 8. Syvänen, A.C. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nature Rev. 2 (2001) 930-942.
  • 9. Mohler V. SNP genotype determination in hexaploid wheat. In: Microscopic fungi - host resistance genes, genetics and molecular research. (Chełkowski, J. and Stępień, Ł. Eds.), 2004, 53-58.
  • 10. Ching, A. and Rafalski, A. Rapid genetic mapping of ESTs using SNP pyrosequencing and indel analysis. Cell. Mol. Biol. Lett. 7 (2002) 803-810.
  • 11. Somers, D.J., Kirkpatrick, R., Moniwa, M. and Walsh, A. Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. Genome 49 (2003) 431-437.
  • 12. Ablett, G.A., Shapter, F., Bowen, S. and Henry, R.J. SNP discovery in microsatellites and ESTsin hexaploid wheat using pyrosequencing. Proc. 10th Int. Wheat Genetics Symposium, Paestrum, Italy, 2003, 919-921.
  • 13. Mochida, K., Kawaura, K. and Ogihara, Y. SNP genotyping of hexaploid wheat by the "Allele-specific pyrosequencing". Proc. 10th Int. Wheat Genetics Symposium, 1-6 Sept. 2003, Paestrum, Italy, (2003) 1003-1005.
  • 14. Rafalski, A.J. Novel genetic mapping tools in plants: SNPs and LD-based approaches. Plant Sci. 162 (2002) 329-333.
  • 15. Pacey-Miller, T. and Henry, R. Single-nucleotide polymorphism detection in plats using a single-stranded pyrosequencing protocol with universal biotinylated primer. Anal. Biochem. 317 (2003) 165-170.
  • 16. Zhang, W., Gianibelli, M.C., Ma, W., Rampling, L. and Gale, K.R. Identification of SNPs and development of allele-specific PCR markers for g-gliadin alleles in Triticum aestivum. Theor. Appl. Genet. 107 (2003) 130-138.
  • 17. Neff, M.M., Neff, J.D., Chory, J. and Pepper, A.E. dCAPS, a simple technique for genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 14 (1998) 387-392.
  • 18. Yanagisawa, T., Kiribuchi-Otobe, C., Hirano, H., Suzuki, Y. and Fujita, M. Detection of single nucleotide polymorphism (SNP) controlling the waxy character in wheat by using a derived cleaved amplified polymorphic sequence (dCAPS) marker. Theor. Appl. Genet. 107 (2003) 84-88.
  • 19. Bundock, P.C., Christopher, J.T., Eggler, P., Ablett, G., Henry, R.J. and Holton, T.A. Single nucleotide polymorphisms in cytochrome P450 genes from barley. Theor. Appl. Genet. 106 (2003) 676-682.
  • 20. Wang, Z. and Moult, J. SNPs, protein structure, and disease. Hum. Mutat. 17 (2001) 263-270.
  • 21. Kaderali, L., Deshpande, A., Nolan, J.P. and White, P.S. Primer-design for multiplexed genotyping. Nucleic Acids Res. 31 (2003) 1796-1802.
  • 22. Chełkowski, J., Golka, L. and Stępień, Ł. Application of STS markers for leaf rust resistance genes in near-isogenic lines of spring wheat cv. Thatcher. J. Appl. Genet. 44 (2003) 323-338.
  • 23. ENTREZ, URL: http ://www.ncbi.nlm. nih.gov/entrez/
  • 24. Hall, T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98.
  • 25. Daly, M.J., Lincoln, S.E. and Lander, E.S. "PRIMER", unpublished software Witehead Institute/MIT Center for Genome Research. (1991) http://www-genome.wi.mit.edu/ftp/pub/software/primer.0.5
  • 26. NetPrimer, URL: http://www .premierbio soft. com/netprimer/
  • 27. Stępień, Ł. Holubec, V. and Chełkowski, J. Resistance genes in wild accessions of Triticeae - inoculation test and STS marker analyses. J. Appl. Genet. 43 (2002) 423-435.
  • 28. Lehnert, V., Holzwarth, J., Ott, M., Thompson, A., Demmak, S. and Foernzel, D. A semi-automated system for analysis and storage of SNPs. Hum. Mutat. 17 (2001) 243-254.
  • 29. Shirver, M.D. and Akey, J.M. SNP 2000: Third international meeting on single nucleotide polymorphism and complex genome analysis. Melting curve SNP (McSNP) genotyping: a simple gel free low-cost approach to SNP genotyping and DNA fragment analysis. Hum. Mutat. 17 (2001) 317347.
  • 30. Ye, J., Parra, J.E., Sosnoski, D.M., Hiester, K., Underhill, P.A. and Shriver, M.D. Melting curve SNP (McSNP) genotyping: a useful approach for diallelic genotyping in forensic science. J. Forensic. Sci. 47 (2002) 593-600.
  • 31. Sylvan, A. SNP 2000: Third international meeting on single nucleotide polymorphism and complex genome analysis. Accurate allele frequency estimation of SNPs using pyrosequencing. Hum. Mutat. 17 (2001) 317-347.
  • 32. Tooley, P.W., Hatziloukas, E., Scott, D.L.and Carras, M.M. Use of ligase chain reaction for enhanced detection of Phytophtora infestans. Can. J. Plant. Pathol. 24 (2002) 294-301.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-e713fcfd-2e3c-412d-afdf-c8926819cb81
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