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1998 | 39 | 4 |

Tytuł artykułu

Properties of the transmission-disequilibrium test for the detection of quantitative trait loci in livestock

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Języki publikacji

EN

Abstrakty

EN
The transmission-disequilibrium test (TDT) is a model-free method to detect linkage between a marker and a trait locus. Originally developed to map disease genes in human genetics, this statistic has been recently extended to deal with quantitative characters. The emphasis of current research is on investigating statistical properties of the test applied to data from livestock populations. For various constellations of sample parameters, it is shown via simulation that the empirically derived null hypothesis distribution of TDT remains in good agreement with its asymptotic distribution while its power is satisfactory only for very close linkage. TDT is then applied to a real data set from milk production data of a dairy cattle population.

Wydawca

-

Rocznik

Tom

39

Numer

4

Opis fizyczny

p.309-319,fig.

Twórcy

autor
  • Agricultural University of Wroclaw, Kozuchowska 7,51-631 Wroclaw, Poland
autor
autor

Bibliografia

  • Allison D.B. (1997). Transmission-disequilibrium tests for quantitative traits. Am. J. Hum. Genet. 60: 676-690.
  • Bovenhuis H., Weller J.I. (1994). Mapping and analysis of dairy cattle quantitative trait loci by maximum likelihood methodology using milk protein genes as genetic markers. Genetics 137: 267-280.
  • Cerosaletti K.M., Lange E., Stringham H.M., Weemaes C.M.R., Smeets D., Sölder B., Belohradsky B.H., Taylor A.M.R., Karnes P., Elliott A., Komatsu K., Gatti R.A., Boehnke M., Concannon P.(1998). Fine localization of the Nijmegen Breakage Syndrome gene to 8q21: evidence for a common founder haplotype. Am. J. Hum. Genet. 63: 125-134.
  • Doerge R., Churchill G.A. (1996). Permutation test for multiple loci affecting a quantitative character. Genetics 142: 285-294.
  • Elston R.C. (1995). Linkage and association to genetic markers. Exp. Clin. Immunogenet. 12: 129-140.
  • Henderson C.R. (1984). Application of linear models in animal breeding. University of Guelph Press, Guelph, Canada.
  • Jenisch S., Henseler T., Nair R.P., Guo S.W., Westphal E., Stuart P., Krönke M., Voorhees J.J., Christophers E., Elder J.T. (1998). Linkage analysis of Human Leukocyte Antigen (HLA) markers in Familial Psoriasis: strong disequilibrium effects provide evidence for a major determinant in the HLA-B/-C region. Am. J. Hum. Genet. 63: 191-199.
  • Liu Z. (1994). Marker assisted complex segregation analysis of milk production traits in dairy cattle. PhD Thesis, Hohenheim.
  • Martin B.R., Weir B.S., Kaplan N.L. (1997). Transmission/disequilibrium tests for identifying quantitative trait loci. Am. J. Hum. Genet. 60, Sup 1659, A294.
  • Spelman R.J., Coppieters W., Karim L., van Arendonk J.A., Bovenhuis H. (1996). Quantitative trait loci analysis for five milk production traits on chromosome six in the Dutch Holstein-Friesian population. Genetics 144: 1799-1808.
  • Spielman R.S., McGinnis R.E., Ewens W.J. (1993). Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent Diabetes Mellitus (IDDM). Am. J. Hum. Genet. 52: 506-516.
  • Wild V. (1997). Marker assisted complex segregation analysis of milk production traits in dairy cattle with Gibbs Sampling. PhD Thesis, Hohenheim.
  • Zhang Q., Boichard D., Hoeschele I., Ernst C., Eggen A., Murkve B., Pfister-Genskow M., Witte L.A., Grignola F.E., Uimari P., Thaller G., Bishop M.D. (1998). Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree. Genetics 149: 1959-1973.

Typ dokumentu

Bibliografia

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