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2001 | 48 | 2 |

Tytuł artykułu

How RNA viruses exchange their genetic material

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
One of the most un usual fea tures of RNA vi ruses is their enor mous ge netic vari abil­ity. Among the dif fer ent pro cesses con trib ut ing to the con tin u ous gen er a tion of new vi ral vari ants RNA re com bi na tion is of spe cial im por tance. This pro cess has been ob­served for human, animal, plant and bacterial viruses. The collected data reveal a great sus cep ti bil ity of RNA vi ruses to re com bi na tion. They also in di cate that ge netic RNA re com bi na tion (es pe cially the nonhomologous one) is a major fac tor re spon si ble for the emer gence of new vi ral strains or spe cies. Al though the for ma tion and ac cu mu la tion of vi ral recombinants was ob served in nu­mer ous RNA vi ruses, the mo lec u lar ba sis of this phe nom e non was stud ied in only a few vi ral spe cies. Among them, brome mo saic vi rus (BMV), a model (+)RNA vi rus of­fers the best op por tu ni ties to in ves ti gate var i ous as pects of ge netic RNA re com bi na­tion in vivo. Unlike any other, the BMV-based system enables homologous and nonhomologous re com bi na tion stud ies at both the pro tein and RNA lev els. As a con se­quence, BMV is the vi rus for which the struc tural re quire ments for ge netic RNA re- com bi na tion have been most pre cisely es tab lished. Nev er the less, the pre vi ously pro­posed model of ge netic re com bi na tion in BMV still had one weak ness: it could not re­ally ex plain the role of RNA struc ture in nonhomologous re com bi na tion. Re cent discoveries concerning the latter problem give us a chance to fill this gap. That is why in this re view we pres ent and thor oughly dis cuss all re sults con cern ing nonhomologous recombination in BMV that have been ob tained un til now.

Wydawca

-

Rocznik

Tom

48

Numer

2

Opis fizyczny

p.391-407,fig.

Twórcy

autor
  • Polish Academy of Sciences, Noskowskiego 12-14, 61-704 Poznan, Poland
autor
autor

Bibliografia

  • 1.Holland, J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S. & Van de Pol, S. (1982) Rapid evolution of RNA genomes. Science 215, 1577-1585.
  • 2.Pathak, V.K. & Hu, W.-S. (1997) Might as well Jump! Temple switching by retroviral reverse transcriptase, defective genome formation and recombination. Semin. Virol. 8, 141-150.
  • 3.Holland, J., DelaTorre, J.C. & Steinhauer, D.A. (1992) RNA virus populations as quasispecies; in Genetic Diversity of RNA Viruses. (Holland, J., ed.) pp. 1-20, Springer Verlag.
  • 4.Domingo, E., Holland, J., Biebricher, C. & Eigen, M. (1995) Quasi-species: The concept and the word; in Molecular Basis of Virus Evolution (Gibbs, A.G., Calisher, C.H. & Garcia-Arenal, F., eds.) pp.181-191, Cambridge University Press, Cambridge.
  • 5.Eigen, M. (1996) On the nature of virus quasispecies. Trends Microbiol. 4, 216-217.
  • 6.Steinhauer, D.A. & Holland, J.J. (1983) Rapid evolution of RNA viruses. Annu. Rev. Microbiol. 41, 409-433.
  • 7.Smith, D.B. & Inglis, S.C. (1987) The mutation rate and variability of eucaryotic viruses: An analytical review. J. Gen. Virol. 68, 2729- 2740.
  • 8.Pathak, V.K. & Temin, H.M. (1990) Broad spectrum of in vivo forward mutations, hypermutations, and hotspots in a retroviral shuttle vector after a single replication cycle: Substitutions, frameshifts, and hypermutations. Proc. Natl. Acad. Sci. U.S.A. 87, 6019-6023.
  • 9.Pathak, V.K. & Temin, H.M. (1990) Broad spectrum of in vivo forward mutations, hypermutations, and hotspots in a retroviral shuttle vector after a single replication cycle: Deletions and deletions with insertions. Proc. Natl. Acad. Sci. U.S.A. 87, 6024-6028.
  • 10.Kim, T., Mudry, R.A., Jr., Rexrode, C.A. & Pathak, V.K. (1996) Retroviral mutation rates and A-to-G hypermutation during different stages of retroviral replication. J. Virol. 70, 7594-7602.
  • 11.Coffin, J.M. (1979) Structure, replication and recombination of retrovirus genomes. Some unifying hypotheses. J. Gen. Virol. 199, 47- 59.
  • 12.Lai, M.M.C. (1992) RNA recombination in animal and plant viruses. Microbiol. Rev. 56, 61-79.
  • 13.Zhang, J. & Temin, H.M. (1993) Rate and mechanism of nonhomologous recombination during a single cycle of retroviral replication. Science 259, 234-238.
  • 14.Simon, A.E. & Bujarski, J.J. (1994) RNA-RNA recombination and evolution in virus-infected plants. Annu. Rev. Phytopathol. 32, 337-362.
  • 15.Khatchikian, D., Orlich, M. & Rott, R. (1989) Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the hemagglutinin gene of an influenza virus. Nature 340, 156-157.
  • 16.Meyers, G., Tautz, N., Dubovi, E.J. & Thiel, H.-J. (1991) Viral cytopathogenicity correlated with integration of ubiquitin-coding sequences. Virology 180, 602-616.
  • 17.Green, A.M. & Allison, R.F. (1994) Recombination between viral RNA and transgenic plant transcripts. Science 263, 1423-1425.
  • 18.Kirkegaard, K. & Baltimore, D. (1986) The mechanism of RNA recombination in poliovirus. Cell 47, 433-443.
  • 19.Figlerowicz, M., Nagy, P.D. & Bujarski, J.J. (1997) A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in RNA virus. Proc. Natl. Acad. Sci. U.S.A. 94, 2073-2078.
  • 20.Figlerowicz, M., Nagy, P.D., Tang, N., Kao, C.C. & Bujarski, J.J. (1998) Mutations in the N-terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination. J. Virol. 72, 9192-9200.
  • 21.Stuhlmann, H. & Berg, P. (1992) Homologous recombination of copackage retrovirus RNAs during reverse transcription. J. Virol. 66, 2378-2381.
  • 22.Figlerowicz, M. & Bujarski, J.J. (1998) RNA recombination in brome mosaic virus, a model plus stranded RNA virus. Acta Bioch. Polon. 45, 1-23.
  • 23.Nagy, P.D., Zhang, C. & Simon, A.E. (1998) Dissecting RNA recombination in vitro: Role of RNA sequences and the viral replicase. EMBO J. 17, 2392-2403.
  • 24.Romanova, L.I., Blinov, V.M., Tolskaya, E.A., Viktorova, E.G., Kolesnikova, M.S., Guseva, E.A. & Agol, V.I. (1986) The primary structure of crossovers regions of intertypic poliovirus recombinants: A model of recombination between RNA genomes. Virology 155, 202-213.
  • 25.Nagy, P.D. & Bujarski, J.J. (1993) Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc. Natl. Acad. Sci. U.S.A. 90, 6390-6394.
  • 26.Zhang, X. & Lai, M.M.C. (1994) Unusual heterogeneity of leader-mRNA fusion in a murine coronavirus: Implications for the mechanism of RNA transcription and recombination. J. Virol. 68, 6626-6633.
  • 27.Vogt, P.K. (1971) The genome of avian RNA tumor viruses: A discussion of four models; in Possible Episomes in Eukaryotes (Sylvestri, L., ed.) pp. 35-41, North-Holland, Amsterdam.
  • 28.Chetverin, A.B., Chetverina, H.V., Demidenko, A.A. & Ugarov, V.I. (1997) Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure. Cell 88, 503-513.
  • 29.King, A.M.Q. (1988) Genetic recombination in positive strand RNA viruses; in RNA Genetics (Domingo, P., Holland, J.J. & Ahlquist, P., eds.) vol. 2, pp. 149-165, CRC Press, Boca Raton.
  • 30.Fields Virology(1996) (Fields, B.M., ed.) 3rd edn., Lippincott-Raven Publishers, Philadelphia, New Jork.
  • 31.Hirst, G.K. (1962) Genetic recombination with Newcastle disease virus, poliovirus and influenza. Cold Spring Harbor Symp. Qant. Biol. 27, 303-309.
  • 32.Ledinko, N. (1963) Genetic recombination with poliovirus type 1 studies of crosses between a normal horse serum-resistant mutant and several guanidine-resistant mutants of the same strain. Virology 20, 107-119.
  • 33.Pringle, C.R. (1965) Evidence of genetic recombination in foot-and-mouth disease virus. Virology 25, 48-54.
  • 34.Jarvis, T.C. & Kirkegaard, K. (1992) Poliovirus RNA recombination: Mechanistic studies in the absence of selection. EMBO J. 11, 3135-3145.
  • 35.Pilipenco, E.V., Gmyl, A.P. & Agol, V.I. (1995) A model for rearrangements in RNA genomes. Nucleic Acids Res. 23, 1870-1875.
  • 36.Fu, K. & Baric, R.S. (1992) Evidence for variable rates of recombination in MHV genome. Virology 189, 88-102.
  • 37.Fu, K. & Baric, R.S. (1994) Map locations of mouse hepatitis virus temperature-sensitive mutants: Confirmation of variable rates of recombination. J. Virol. 68, 7458-7466.
  • 38.Banner, L.R., Keck, J.G. & Lai, M.M.-C. (1990) A clustering of RNA recombination sites adjacent to a hyper-variable region of the peplomer gene of murine coronavirus. Virology 175, 548-555.
  • 39.Simon, A.E. & Howell, S.H. (1986) The virulent satellite RNA of turnip crinkle virus has a major domain homologous to the 3'-end of the helper virus genome. EMBO J. 7, 3423-3428.
  • 40.Oh, J.-W., Kong, Q., Song, C., Carpenter, C.D. & Simon, A.E. (1995) Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon. Mol. Plant Microbe Interact. 8, 979-987.
  • 41.Li, X.H., Heaton, L.A., Morris, T.J. & Simon, A.E. (1989) Turnip crinkle virus defective interfering RNAs intensify viral symptoms and are generated de novo. Proc. Natl. Acad. Sci. U.S.A. 86, 9173-9177.
  • 42.Cascone, P.J., Carpenter, C.D., Li, X.H. & Simon, A.E. (1990) RNA recombination between satellite RNAs of turnip crinkle virus. EMBO J. 9, 1709-1715.
  • 43.Cascone, P.J., Haydar, T.F. & Simon, A.E. (1993) Sequences and structures required for recombination between virus-assisted RNAs. Science 260, 801-805.
  • 44.Zhang, C., Cascone, P.J. & Simon, A.E. (1991) Recombination between satellite and genomic RNAs of turnip crinkle virus. Virology 184, 791-794.
  • 45.Carpenter, C.D., Oh, J.-W., Zhang, C. & Simon, A.E. (1995) Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination. J. Mol. Biol. 245, 608-622.
  • 46.Mindich, L., Qiao, X., Onodera, S., Gottlieb, P. & Strassman, J. (1992) Heterologous recombination in the double-stranded RNA bacteriophage 6. J. Virol. 66, 2605-2610.
  • 47.Onodera, S., Qiao, X., Gottlieb, P., Strassman, J., Frilander, M. & Mindich, L. (1993) RNA structure and heterologous recombination in the double-stranded RNA bacteriophage 6. J. Virol. 67, 4914-4922.
  • 48.Li, Y. & Ball, L.A. (1993) Non-homologous RNA recombination during negative strand synthesis of flock house virus RNA. J Virol. 67, 3854-3860.
  • 49.Raju, R., Subramaniam, S.V. & Hajjou, M. (1995) Genesis of Sindbis virus by in vivo recombination of nonreplicative RNA precursors. J. Virol. 69, 7391-7401.
  • 50.Ahlquist, P. (1992) Bromovirus RNA replication and transcription. Curr. Opin. Genet. Dev. 2, 71-76.
  • 51.Bujarski, J.J. & Kaesberg, P. (1986) Genetic recombination in a multipartite plant virus Nature 321, 528-531.
  • 52.Nagy, P.D. & Bujarski, J.J. (1995) Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers. J. Virol. 69, 131-140.
  • 53.Figlerowicz, M. (2000) Role of RNA structure in heteroduplex-mediated and site-specific nonhomologous recombination in brome mosaic virus. Nucleic Acids Res. 28, 1714-1723.
  • 54 . Figlerowicz, M. & Bibillo, A. (2000) RNA motifs mediating in vivo site-specific nonhomologous recombination in (+) RNA virus enforce in vitro nonhomologous crossovers with HIV-1 reverse transcriptase. RNA 6, 339-351.
  • 55.von Hippel, P.H. (1998) An integrated model of the transcription complex in elongation, termination and editing. Science 281, 660-665.
  • 56.Bibillo, A., Figlerowicz, M. & Kierzek, R. (1999) The non-enzymatic hydrolysis of oligoribonucleotides. VI. The role of biogenic polyamines. Nucleic Acids Res. 27, 3931-3937.
  • 57.Bibillo, A., Figlerowicz, M. & Kierzek, R. (1999) Nonenzymatic hydrolysis of oligoribonucleotides. VII Structural elements affecting hydrolysis. Nucleotides Nucleosides 19, 977-994.
  • 58.Kierzek, R. (1992) Hydrolysis of oligoribonucleotides: Influence of sequence and length. Nucleic Acids Res. 20, 5073-5077.
  • 59.Kierzek, R. (1992) Nonenzymatic hydrolysis of oligoribonucleotides. Nucleic Acids Res. 20, 5079-5084.

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