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2007 | 12 | 1 |

Tytuł artykułu

Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Sequence Specific Amplification Polymorphisms (SSAP) were used to measure the distribution and structure of SIRE-1 retroelement populations in annual and perennial Glycine species. For SSAP analysis, primers corresponding to a region immediately upstream of the 3’LTR of the soybean retroelement SIRE-1 were chosen. Analysis reveals that SIRE-1 is present throughout the Glycine genus and shows that the annual species have similar SIRE-1 populations whilst the perennial species have much more distinct and diverse populations. The high number of species-specific subgroups suggest that SIRE-1 has been active and evolving independently in each species during the course of Glycine evolution.

Wydawca

-

Rocznik

Tom

12

Numer

1

Opis fizyczny

p.103-110,fig.,ref.

Twórcy

autor
  • Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, U.K.
autor
autor

Bibliografia

  • 1. Doyle, J.J., Doyle, J.L., Rauscher, J.T. and Brown, A.H.D. Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine) New Phytol. 161 (2003) 121-132.
  • 2. Ahrent, D.K. and Caviness, C.E. Natural cross-pollination of twelve soybean cultures in Arkansas. Crop Sci. 34 (1994) 376-378.
  • 3. Hymowitz, T., Singh, R.J. and Kollipara, K.P. The genomes of Glycine. Plant Breed. Rev. 16 (1998) 289-317.
  • 4. Laten, H.M. Phylogenetic evidence for Ty1-copia –like endogenous retroviruses in plant genomes. Genetica 107 (1999) 87-93.
  • 5. Laten, H.M., Havecker, E.R. and Voytas, D.F. SIRE-1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young. Mol. Biol. Evol. 20 (2003) 1222-1230.
  • 6. Gribbon, B.M., Pearce, S.R., Kalendar, R., Schulman, A., Paulin, L., Jack, P., Kumar, A. and Flavell, A.J. Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes. Mol. Gen. Genet. 261 (1999) 883-891.
  • 7. Pearce, S.R., Knox, M., Ellis, T.H.N., Flavell, A.J. and Kumar, A. Pea Ty1- copia group retrotransposons: Transpositional activity and use as molecular markers to study genetic diversity in Pisum. Mol. Gen. Genet. 263 (2000) 898-907.
  • 8. Tam, S.M., Mhiri, C., Vogelaar, A., Kerkveld, M., Pearce, S.R. and Grandbastien, M-A. Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor. Appl. Genet. 110 (2005) 819-831.
  • 9. Waugh, R., McLean, K., Flavell, A.J., Pearce, S.R., Kumar, A., Thomas, B.B.T. and Powell, W. Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence specific amplification polymorphisms (SSAP). Mol. Gen. Genet. 253 (1997) 687-694.
  • 10. Pearce, S.R., Stuart-Rogers, C., Kumar, A. and Flavell, A.J. Rapid isolation of plant Ty1-copia group retrotransposons LTR sequences for molecular marker studies. Plant J. 19 (1999) 1-7.
  • 11. Nei, M. and Takezaki, N. Estimation of genetic distances and phylogenetic trees from DNA analysis. Proc. 5th World Cong. Genet. Appl. Livestock Prod. 21 (1983) 405-412.
  • 12. Liu, K. and Muse, S.V. PowerMarker: Integrated analysis environment for genetic marker data. Bioinformatics 21 (2005) 2128-2129.
  • 13. Felsenstein, J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791.
  • 14. Peterson-Burch, B.D., Wright, D.A., Laten, H.M. and Voytas, D.F. Retroviruses in plants? Trends Genet. 16 (2000) 151-152.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-c7856878-9fbc-4ad8-841f-f08644daf49b
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