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1999 | 46 | 1 |

Tytuł artykułu

Nonenzymatic hydrolysis of oligoribonucleotides. V. The elements affecting the process of self-hydrolysis

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Chemical instability of some of the phosphodiester bonds, often observed in large RNAs, visualizes the autocatalytic properties of this class of nucleic acids. Unexpect­edly, selective hydrolysis occurs also in short oligoribonucleotides (as short as a tet- ramer or hexamer). Herein, we describe additional experiments which support the conclusion that the hydrolysis is not due to ribonuclease contamination but is of autocatalytic origin and is related to the sequence and structure of single-stranded oligomers. Moreover, we show that the presence in the reaction mixture of poly- amines, such as spermidine, is essential for hydrolysis of oligoribonucleotides.

Wydawca

-

Rocznik

Tom

46

Numer

1

Opis fizyczny

p.145-153,fig.

Twórcy

autor
  • Polish Academy of Sciences, Z.Noskowskiego 12-14, 61-704 Poznan, Poland
autor
autor

Bibliografia

  • 1. Altman, S., Kirsebom, L. & Talbot, S. (1993) Recent studies of ribonuclease P. FASEB J. 7, 7-14.
  • 2. Cech, T.R. (1990) Self-splicing of group 1 ni­trons. Annu. Rev. Biochem. 59, 543-568.
  • 3. Symons, R.H. (1992) Small catalytic RNAs. Annu. Rev. Biochem. 61, 641-671.
  • 4. Kierzek, R. (1992) Nonenzymatic hydrolysis of oligoribonucleotides. Nucleic Acids Res. 20, 5079-5084.
  • 5. Kierzek, R. (1992) Hydrolysis of oligoribonu­cleotides: Influence of sequence and length. Nucleic Acids Res. 20, 5073-5077.
  • 6. McBride, L.J. & Caruthers, M.H. (1983) An in­vestigation of several deoxynucleoside phos- phoramidites useful for synthesizing deoxyoli- gonucleotides. Tetrahedron Lett. 24, 245-249.
  • 7. Wincott, F., DiRenzo, A., Shaffer, C., Grimm, S., Tracz, D., Workman, C., Sweedler, D., Gonzalez, C., Scringe, S. & Usman, N. (1995) Synthesis, deprotection, analysis and purifica­tion of RNA and ribozymes. Nucleic Acids Res. 23, 2677-2684.
  • 8. Davanloo, P., Rosenberg, A.H., Dunn, J.J. & Studier, F.W. (1984) Cloning and expression of the gene for bacteriophage T7 RNA po­lymerase. Proc. Natl Acad. ScL U.S.A. 81, 2035-2039.
  • 9. Scheel, G. & Blackburn, P. (1979) Role of mammalian RNAse inhibitor in cell-free pro­tein synthesis. Proc. Natl. Acad. ScL U.S.A. 46, 4898-4902.
  • 10. Ebeling, W., Hennrich, N., Klockow, M., Metz, H., Orth, H.D. & Lang, H. (1974) Proteinase K from Tritirachium album Limber. Eur. J. Bio chem. 47, 9:-97.
  • 11. Bibillo, A. (1998) Ph.D. Thesis, Institute of Bioorganic Chemistry, Polish Academy of Sci­ences.
  • 12. Freier, S.M., Kierzek, R., Jaeger, J.A., Sugi- moto, N., Caruthers, M.H., Neilson, T. & Turner, D.H. (1986) Improved free-energy pa­rameters for predictions of RNA duplexes sta­bility. Proc. Natl Acad. Sci U.S.A. 83, 9373- 9377.
  • 13. Burke, J.M., Belfast, M., Cech, T.R., Davis, R.W., Schweyen, R., Shub, D., Szostak, J.W. & Tabak, H. (1987) Structural conventions for group I introns. Nucleic Acids Res. 15, 7217- 7221.
  • 14. Zaug, A.J., Grosshans, C.A. & Cech, T.R. (1988) Sequence-specific endoribonuclease ac­tivity of the Tetrahymena ribozyme: Enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes. Biochemistry, 27, 8924-8931.
  • 15. Banerjee, A.R., Jaeger, J.A. & Turner, D.H. (1993) Thermal unfolding of a group I ribo­zyme: The low-temperature transition is pri­marily disruption of tertiary structure. Bio­chemistry 32, 153-163.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-c6842008-1df8-481b-960a-80f684f87088
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