PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
2002 | 44 |

Tytuł artykułu

Plant DNA isolation from differently preserved Thalictrum leaf tissues and its use in RAPD analysis

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
There are many unsolved taxonomic problems at the intraspecific level in the genus Thalictrum (Ranunculaceae), which may be clarified using molecular systematics methods. No molecular systematics methods have been applied yet to the genus Thalictrum; this study analyzes different leaf tissue preservation and DNA isolation techniques, and the applicability of RAPD. A modified DNA isolation procedure using solution of laundry detergent as a detergent buffer system was the most suitable, especially for dealing with large samples. Since the use of differently preserved leaf tissues simultaneously with fresh leaf tissue may improve sampling in taxonomic research, and because the RAPD technique is sensitive to different factors, the possible drawbacks of using such tissues in RAPD analyses were checked. Of the four preserved leaf tissues, only DNA from silica gel-preserved leaf tissue gave suitably reliable RAPD results to be used with fresh leaf tissue in more extensive taxonomic research. Differently preserved leaf tissues are very problematic starting materials for simultaneous use with fresh leaf tissue in the same RAPD analysis. If differently preserved leaf tissues are to be used and reliable results are to be obtained, research techniques similar to those used in this paper should be applied.

Wydawca

-

Rocznik

Tom

44

Opis fizyczny

p.73-77,fig.,ref.

Twórcy

autor
  • University of Zagreb, Marulicev trg 20-2, HR-10000 Zagreb, Croatia
autor
autor

Bibliografia

  • Adams RP, Zhong M, and Fei Y. 1999. Preservation of DNA in plant specimens: inactivation and re-activation of DNases in field specimens. Molecular Ecology 8: 681-684.
  • Akeroyd JR. 1993. Thalictrum. In: Tutin TG, Burges NA, Chater AO, Edmondson JR, Heywood VH, Moore DM, Valentine DH, Walters SM, and Webb DE [eds.], Flora Europaea, 2nd ed., vol. 1, 290-292. Cambridge University Press, Cambridge.
  • Bahl A, and Pfenninger M. 1996. A rapid method of DNA isolation using laundry detergent. Nucleic Acids Research 24: 1587-1588.
  • Chase MW, and Hills HH. 1991. Silica gel: An ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
  • Damboldt J, and Zimmerman W. 1974. Thalictrum. In: Hegi G [ed.], Illustrierte Flora von Mittel-Europa, Band III/3, 317- 332. Carl Hanser Verlag, München,
  • Davis PH, Coode MJE, and Cullen J. 1965. Thalictrum. In: Davis PH [ed.], Flora of Turkey, vol. 1, 199-203. University Press, Edinburgh.
  • Doyle JJ, and Dickson EE. 1987. Preservation of plant samples for DNA restriction endonuclease analysis. Taxon 36: 715- 722.
  • Doyle JJ, and Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
  • Flournoy LE, Adams RP, and Pandy RN. 1996. Interim and archival preservation of plant specimens in alcohols for DNA studies. BioTechniques 20: 657-660.
  • Harborne JB. 1984. Phytochemical Methods - a guide to modern techniques of plant analysis. 2nd ed. Chapman and Hall, London, New York.
  • Harris SA. 1993. DNA analysis of tropical plant species: an assessment of different drying methods. Plant Systematic and Evolution 188: 57-64.
  • Hoot SB. 1995. Phylogeny of the Ranunculaceae based on preliminary atpB, rhcL and 18S nuclear ribosomal DNA sequence data. Plant Systematics and Evolution (Suppl.) 9: 241-251.
  • Jelaska SD, Nikolić T, and Mihelj D. 1996. Fruit variability of Thalictrum L. (Ranunculaceae) genus in Europe. Annali dei Musei Civici di Rovereto 11: 243-255.
  • Johansson JT, and Jensen RK. 1993. Chloroplast DNA variation and phylogeny of the Ranuculaceae. Plant Systematics and Evolution 187: 29-49.
  • Jones CJ, Edwards KJ, Castiglione S, Winfield MO, Sala F, Van der Wiel C, Vosman BL, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Marmiroli N, Aert RL, Volckaert AG, Rueda J, Vazquez A, and Karp A. 1998. Reproducibility testing of RAPDs by a network of European laboratories. In: Karp A, Isaac PS, and Ingram DS [eds.], Molecular tools for screening biodiversity, 176-179. Chapman and Hall, London, Weinheim, New York, Tokyo, Melbourne, Madras.
  • Kubitzki K, Rohwer JG, and Bittrich V. 1993. The families and genera of vascular plants 2. Springer Verlag, Berlin.
  • Liston A, Rieseberg LH, Adams RP, and Ge-lin Z. 1990. A method for collecting dried plant specimens for DNA and isozyme analyses, and the results of a field test in Xinjiang, China. Annals of the Missouri Botanical Garden 77: 859-863.
  • MacPherson JM, Eckstein PE, Scoles GJ, and Gajadhar AA. 1993. Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration. Molecular and Cellular Probes 7: 293-299.
  • Meunier JR, and Grimont PA. 1993. Factors affecting reproducibility of random amplified polimorphic DNA fingerprinting. Research in Microbiology. 144: 373-379.
  • Nevskii SA. 1970. Thalictrum. In: Komarov VL, Shishkin BK [eds.], Flora of the USSR, vol. 7, 389-403. Israel Program for Scientific Translation, Jerusalem.
  • Nickrent DL. 1994. From field to film: rapid sequencing methods for field-collected plant species. BioTechniques 16: 470-475.
  • Nikolić T. 1989. Phenotypic variability of leaflets in Thalictrum minus complex (Ranunculaceae). Acta Botanica Croatica 48: 177-187.
  • Nikolić T. 1991a. Phenotypic variability of fruit and its taxonomic significance in Thalictrum minus complex and species Thalictrum velebiticum Deg. Feddes Repertorium 102: 69-74.
  • Nikolić T. 1991b. Phenotypic plasticity and taxonomic significance in Thalictrum minus complex. Feddes Repertorium 102: 345-349.
  • Pyle MM, and Adams RP. 1989. In situ preservation of DNA in plant specimens. Taxon 38: 576-581.
  • Riedl H. 1992. Thalictrum. In: Iranshahr M, Rechinger KH, and Riedl H [eds.], Flora des Iranischen Hochlandes und der Umrahmenden Gebirge, No. 171, 114-126. Akademische Druck, Graz.
  • Rieseberg LH. 1996. Homology among RAPD fragments in interspecific comparisons. Molecular Ecology 5: 99-105.
  • Sambrook J, Fritch EF, and Maniatis T. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
  • Savolainen V, Cuénoud P, Spichiger R, Martinez MDP, Crčvecoeur M, and Manen JF. 1995. The use of herbarium specimens in DNA phylogenetics: evaluation and improvement. Plant Systematics and Evolution 197: 87-98.
  • Soltis DE, Soltis PS, and Doyle JJ. 1998. Molecular systematics of plants II: DNA sequencing. Kluwer Academic Publishers, Boston, Dordrecht, London.
  • Storchova H, Hrdličkova R, Chrtek J, Tetera M, Fitze D, and Fehrer J. 2000. An improved method of DNA isolation from plants collected in the field and conserved in saturated NaCl/CTAB solution. Taxon 49: 79-84.
  • Weising K, Nybom H, Wolff K, and Meyer W. 1995. DNA fingerprinting in plants and fungi. CRC Press, Inc., Boca Raton.
  • Williams JGK, Kubelik AR, Ltvak KJ, Rafalski JA, and Tingey SV. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18: 6531.
  • Wolfe AD, and Liston A. 1998. Contribution of PCR-based methods to plant systematics and evolutionary biology. In: Soltis DE, Soltis PS, and Doyle JJ [eds.], Molecular systematics of plants II: DNA sequencing, 43-86. Kluwer Academic Publishers, Boston, Dordrecht, London.
  • Yu K, and Pauls KP. 1992. Optimization of PCR program for RAPD analysis. Nucleic Acids Research 20: 2606.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-bd5a0021-fc5b-4560-8880-5e29a79ac7e1
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.