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2006 | 62 | 04 |

Tytuł artykułu

Postep w rozwoju techniki cyklicznej polimeryzacji DNA in vitro - Real-Time PCR

Autorzy

Warianty tytułu

EN
Recent developments in polymerase chain reaction - Real-Time PCR

Języki publikacji

PL

Abstrakty

EN
Polymerase chain reaction (PCR) has for many years been regarded as the new standard procedure in detecting the genes of microorganisms, plants and animals. Detecting the reacting products is reliant upon agarose gel electrophoresis, ethidium bromide staining, ultraviolet irradiation and comparing the size to a DNA size marker. This has slowed progress in adopting the PCR method in diagnostic laboratories. Developing new methods of PCR product detection without opening a reaction tube has opened new possibilities in applying this technique during routine diagnosis. Monitoring PCR product accumulation as amplification progresses is possible through using labeled primers and/or oligonucleotide probes or DNA binding fluorophores. Real-Time PCR methods can be subdivided into two groups: sequence dependent or sequence independent DNA detection. All of these involve using fluorophores linked to oligonucleotides or their presence in the reaction mixture. Their common feature is measuring fluorescence in each PCR cycle and calculating the threshold cycle that corresponds to the DNA copy number in that sample.

Wydawca

-

Rocznik

Tom

62

Numer

04

Opis fizyczny

s.390-394,rys.,bibliogr.

Twórcy

autor
  • Panstwowy Instytut Weterynaryjny-Panstwowy Instytut Badawczy, Al.Partyzantow 57, 24-100 Pulawy

Bibliografia

  • 1.Abravaya K., Huff J., Marshall, R., Merchant B., Mullen C., Schneider G., Robinson J.: Molecular beacons as diagnostic tools: technology and applications. Clin. Chem. Lab. Med. 2003, 41, 468-474.
  • 2.Alexandersen S., Oleksiewicz M. B., Donaldson A. I.: The early pathogenesis of foot-and-mouth disease in pigs infected by contact: a quantitative timecourse study using TaqMan RT-PCR. J. Gen. Virol. 2001, 82, 747-755.
  • 3.Belak S., Thoren P.: Molecular diagnosis of animal diseases: some experiences over the past decade. Expert Rev. Mol. Diagn. 2001, 1, 434-443.
  • 4.Cai H. Y., Archambault M., Gyles C. L., Prescott J. F.: Molecular genetic methods in the veterinary clinical bacteriology laboratory: current usage and future applications. Anim. Health Res. Rev. 2003, 4, 73-93.
  • 5.Cardullo R. A., Agrawal S., Flores C., Zamecnik P. C., Wolf D. E.: Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. USA 1988, 85, 8790-8794.
  • 6.Clegg R. M.: Fluorescence resonance energy transfer and nucleic acids. Meth. Enzymol. 1992, 211, 353-388.
  • 7.Didenko V. V.: DNA probes using fluorescence resonance energy transfer (FRET): designs and applications. Biotechniques 2001, 31, 1106-1121.
  • 8.Heid C. A., Stevens J., Livak K. J., Williams P. M.: Real time quantitative PCR. Genome Res. 1996, 6, 986-994.
  • 9.Higuchi R., Dollinger G., Walsh P. S., Griffith R.: Simultaneous amplification and detection of specific DNA sequences. Biotechnology 1992, 10, 413- -417.
  • 10.Jackwood D. J., Sommer S. E.: Identification of infectious bursal disease virus quasispecies in commercial vaccines and field isolates of this double- -stranded RNA virus. Virology 2002, 304, 105-113.
  • 11.Legeay O., Bounaix S., Denis M., Arnauld C., Hutet E., Cariolet R., Albina E., Jestin A.: Development of a RT-PCR test coupled with a microplate colorimetric assay for the detection of a swine Arterivirus (PRRSV) in boar semen. J. Virol. Meth. 1997, 68, 65-80.
  • 12.McGoldrick A., Lowings J. P., Ibata G., Sands J. J., Belak S., Paton D. J.: A novel approach to the detection of classical swine fever virus by RT-PCR with a fluorogenic probe (TaqMan). J. Virol. Meth. 1998, 72, 125-135.
  • 13.Morrison T. B., Weis J. J., Wittwer C. T.: Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques 1998, 24, 954-962.
  • 14.Mullis K., Faloona F., Scharf S., Saiki R., Horn G., Erlich H.: Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Biotechnology 1992, 24, 17-27.
  • 15.Nazarenko I. A., Bhatnagar S. K., Hohman R. J.: A closed tube format for amplification and detection of DNA based on energy transfer. Nucleic Acids Res. 1997, 25, 2516-2521.
  • 16.Orlando C., Pinzani P., Pazzagli M.: Developments in quantitative PCR. Clin. Chem. Lab. Med. 1998, 36, 255-269.
  • 17.Rasmussen T. B., Uttenthal A., de Stricker K., Belak S., Storgaard T.: Development of a novel quantitative real-time RT-PCR assay for the simultaneous detection of all serotypes of foot-and-mouth disease virus. Arch. Virol. 2003, 148, 2005-2021.
  • 18.Ririe K. M., Rasmussen R. P., Wittwer C. T.: Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Bioch. 1997, 245, 154-160.
  • 19.Sambrook J., Fritsch E. F., Maniatis T.: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Nowy Jork 1989.
  • 20.Schalasta G., Arents A., Schmid M., Braun R. W., Enders G.: Fast and type- -specific analysis of herpes simplex virus types 1 and 2 by rapid PCR and fluorescence melting-curve-analysis. Infection 2000, 28, 85-91.
  • 21.Tyagi S., Bratu D. P., Kramer F. R.: Multicolor molecular beacons for allele discrimination. Nature Biotechnology 1998, 16, 49-53.
  • 22.van Rijn P. A., Wellenberg G. J., Hakze-van der Honing R., Jacobs L., Moonen P. L., Feitsma H.: Detection of economically important viruses in boar semen by quantitative Real-Time PCR technology. J. Virol. Meth. 2004, 120, 151-160.
  • 23.Whitcombe D., Theaker J., Guy S. P., Brown T., Little S.: Detection of PCR products using self-probing amplicons and fluorescence. Nature Biotechnology 1999, 17, 804-807.
  • 24.Zarlenga D. S., Higgins J.: PCR as a diagnostic and quantitative technique in veterinary parasitology. Vet. Parasitol. 2001, 101, 215-230.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-68d8103b-f297-47ca-9669-111cf0787ff2
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