Restriction analysis of genetic variability of Polish isolates of tomato black ring virus

• Autorzy: Jonczyk M. , Borodynko N. , Pospieszny H.
• Języki publikacji: EN

Abstrakty

EN

Several different isolates of Tomato black ring virus (TBRV) have been collected in Poland from cucumber, tomato, potato and black locust plants. Biological tests showed some differences in the range of infected plants and the type of symptoms, which was the basis for selection of seven the most biologically different TBRV iso­lates. According to the sequence of TBRV-MJ, several primer pairs were designed and almost the entire sequence of both genomic RNAs was amplified. The RT-PCR products derived from all tested TBRV isolates were digested by restriction en­zymes. On the basis of the restriction patterns, the variable and the conserved re­gions of the TBRV genome were defined and the relationships between the Polish TBRV isolates established.

Słowa kluczowe

EN

phylogenesis; restriction analysis; tomato black ring virus; plant virus; potato; cucumber; biological test; tomato

• Wydawca: -
• Czasopismo: Acta Biochimica Polonica
• Rocznik: 2004
• Tom: 51
• Numer: 3
• Opis fizyczny: p.673-681,fig.,ref.

Twórcy

autor

Jonczyk M.

• Institute of Plant Protection, Miczurina 20, 60-318 Poznan, Poland

autor

Borodynko N.

autor

Pospieszny H.

Bibliografia

• Blaszczak W, Pospieszny H. (1987) Ligustrum vulgare — a natural host of the Tomato black ring virus. Prace naukowe IOR, Poznan.; 29: 126-36.
• Borodynko N, Palczewska M, Pospieszny H. (2001) Serological variability of Polish isolates of Tomato black ring nepovirus (in Polish). Prog Plant Protection/Post Ochrony Roslin.; 41: 696-8.
• Bruyere A, Wantroba M, Flasinski S, Dzianott A, Bujarski JJ. (2000) Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus. J Virol.; 74: 4214-9.
• Canizares MC, Marcos JF, Pallas V. (2001) Molecular variability of twenty-one geographically distinct isolates of Carnation mottle virus (CarMV) and phylogenetic relationships within the Tombusviridae family. Arch Virol.; 146: 2039-51.
• Chrzanowska M, Sniegowski C. (1965) Wirus pstrej plamistosci lodygi, bukietowatosci i mozaiki lucerny na ziemniakach oraz sposoby ich rozpoznawania. Biul Inst Hod Aklim Roslin.; 5/6: 77-85 (in Polish).
• Cheng CP, Pogany J, Nagy PD. (2002) Mechanism of DI RNA formation in tombusviruses: Dissecting the requirement for primer extention by the tombusvirus RNA-dependent RNA polymerase in vitro. Virology.; 304: 460-73.
• Demangeat G, Greif C, Hemmer O, Fritsch C. (1990) Analysis of the in vitro cleavage products of the tomato black ring virus RNA1 encoded 250K polyprotein. J Gen Virol.; 71: 1649-54.
• Demangeat G, Hemmer O, Fritsch C, Le Gall O, Candresse T. (1991) In vitro processing of the RNA2 encoded polyprotein of two nepoviruses: tomato black ring virus and grapevine chrome mosaic virus. J Gen Virol.; 72: 247-52.
• Dolja VV, Carrington JC. (1992) Evolution of positive-strand RNA viruses. Semin Virol.; 3: 315-26.
• Domingo E, Holland JJ. (1997) RNA virus mutations and fitness for survival. Annu Rev Microbiol.; 51: 151-78.
• Drake JW. (1993) Rates of spontaneous mutation among RNA viruses. Proc Natl Acad Sci USA.; 90: 4171-5.
• Fritsch C, Koenig I, Murant AF, Raschke JH, Mayo MA. (1984) Comparison among satellite RNA species from five isolates of Tomato black ring virus and one isolate of Myrobalan latent ringspot virus. J Gen Virol.; 63: 289-94.
• Fritsch C, Mayo M, Hemmer O. (1993) Properties of the satellite RNA of nepoviruses. Biochimie.; 75: 561-7.
• Gaire F, Schmitt C, Stussi-Garaud C, Pinck L, Ritzenthaler C. (1999) Protein 2A of grapevine fanleaf nepovirus is implicated in RNA2 replication and colocalizes to the replication site. Virology.; 264: 25-36.
• Graves MV, Pogany J, Romero J. (1996) Defective interfering RNAs and defective viruses associated with multipartite RNA viruses of plants. Semin Virol.; 7: 399-408.
• Grief C, Hemmer O, Fritsh C. (1988) Nucleotide sequence of Tomato black ring virus RNA-1. J Gen Virol.; 69: 1517-29.
• Havelda Z, Szittya G, Burgyan J. (1998) Characterization of the molecular mechanism of defective interfering RNA- mediated symptoms attenuation in Tombusvirus-infected plants. J Virol.; 72: 6251-6.
• Hemmer O, Greif C, Dufourcq P, Reinbolt J, Fritsch C. (1995) Functional characterization of the proteolytic activity of the tomato black ring nepovirus RNA-1-encoded polyprotein. Virology.; 206: 362-71.
• Hemmer O, Oncino C, Fritsch C. (1993) Efficient replication of the in vitro transcripts from cloned cDNA of tomato black ring virus satellite RNA requires the 48K satellite RNA-encoded protein. Virology.; 194: 800-6.
• Hernandez C, Carette JE, Brown DJF, Bol J. (1996) Serial passage of Tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA2. J Virol.; 70: 4933-40.
• Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S. (1982) Rapid evolution of RNA genomes. Science.; 215: 1577-85.
• Huynen MA, Stadler PF, Fontana W. (1996) Smoothness within ruggedness: the role of neutrality in adaptation. Proc Natl AcadSci USA.; 93: 397-401.
• Jonczyk M, Le Gall O, Palucha A, Borodynko N, Pospieszny H (2004) Cloning and sequencing of full-length cDNAs of RNA1 and RNA2 of a Tomato black ring virus isolate from Poland. Arch Virol.; 149: 799-807.
• Kaminska M, Wos M. (1978) Some properties of isolates of Tomato black ring virus. Zeszyty Probl Post Nauk Roln.; 214: 109-17 (in Polish).
• Kaminska M, Sobilo J. (1983) Choroby wirusowe forsycji (Forsythia sp.). Czesc I. Wystepowanie wirusow na forsycji. Rosliny Ozdobne.; 8: 221-8 (in Polish).
• Kaminska M, Mierzwa Z. (1984) Serological characterization of TRV, TBRV and RRV isolated from forsythia. Zeszyty Probl Post Nauk Roln.; 298: 92-7 (in Polish).
• Kim MJ, Kao C. (2001) Factors regulating template switch in vitro by viral RNA-dependant RNA polymerases: implications for RNA-RNA recombination. Proc Natl Acad Sci USA.; 98: 4972-7.
• Koonin EV. (1991) The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol.; 72: 2197-206.
• Le Gall O, Candresse T, Dunez J. (1995b) Transfer of the 3' non-translated region of grapevine chrome mosaic virus RNA- 1 by recombination to tomato black ring virus RNA-2 in pseudorecombinant isolates. J Gen Virol.; 76: 1285-9.
• Le Gall O, Lanneau M, Candresse T, Dunez J. (1995a) The nucleotide sequences of the RNA-2 of an isolate of the English serotype of tomato black ring virus: RNA recombination in the history of nepoviruses. J Gen Virol.; 76: 1279-83.
• Leisner SM, Neher DA. (2002) Third position codon composition suggests two classes of genes within the Cauliflower mosaic virus genome. J Theor Biol.; 217: 195-201.
• Lin HX, Rubio L, Smythe A, Jiminez M, Falk BW. (2003) Genetic diversity and biological variation among California isolates of Cucumber mosaic virus. J Gen Virol.; 84: 249-58.
• Melcher U. (2000) The 30K superfamily of viral movement proteins. J Gen Virol.; 81: 257-66.
• Meyer M, Hemmer O, Mayo MA, Fritsch C. (1986) The nucleotide sequence of tomato black ring virus RNA2. J Gen Virol.; 67: 1257-71.
• Mushegian AR. (1994) The putative movement domain encoded by nepovirus RNA-2 is conserved in all sequenced nepoviruses. Arch Virol.; 135: 437-41.
• Nagy PD, Bujarski JJ. (1998) Silencing homologous RNA recombination hot spots with GC-rich sequences in Brome mosaic virus. J Virol. ; 72: 1122-30.
• Page RD. (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci.; 12: 357-8.
• Pavlicek A, Hrda S, Flegr J. (1999) FreeTree freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biol (Praha).; 45: 97-9.
• Petrzik K, Lenz O. (2002) Remarkable variability of apple mosaic virus capsid protein gene after nucleotide position 141. Arch Virol.; 147: 1275-85.
• Pospieszny H, Borodynko N. (1999) Wirus czarnej pierscieniowej plamistosci pomidora (Tomato black ring nepovirus) - metody wykrywania i identyfikacji. Prog Plant Protection/Post Ochr Roslin.; 39: 327-31 (in Polish).
• Pospieszny H, Jonczyk M, Borodynko N. (2003) First record of Tomato black ring virus (TBRV) in the natural infection of Cucumis sativus in Poland. J Plant Prot Res.; 43: 11-8.
• Roossinck MJ. (1997) Mechanism of plant virus evolution. Annu RevPhytopathol.; 35: 191-209.
• Roossinck MJ. (2002) Evolutionary history of Cucumber mosaic virus deduced by phylogenetic analyses. J Virol.; 76: 3382-7.
• Sambrook J, Fritsch EF, Maniatis T. (1989) Molecular Cloning. A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press.
• Schneider WL, Roossinck MJ. (2001) Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions. JVirol.; 75: 6566-71.
• Steinkellner H, Himmler G, Sagl R, Mattanovich D, Katinger H. (1992) Amino-acid sequence comparison of nepovirus coat proteins. Virus Genes.; 6: 197-202.
• Szittya G, Molnar A, Silhavy D, Hornyik C, Burgyan J. (2002) Short defective interfering RNAs of Tombusviruses are not targeted but trigger post-transcriptional gene silencing against their helper virus. Plant Cell.; 14: 359-72.
• Twardowicz-Jakusz, A. (1969) Diagnostic investigation of Tomato black ring virus. Inst Plant Prot Bull.; 44: 123-36.
• Twardowicz-Jakusz A. (1976) Virus diseases of Umbelliferous vegetables in Poland. 8th Conference of Plant Virology, Bratislava: 445-7.
• Twardowicz-Jakusz A, Kaniewski W, Dunajska L. (1977a) Z badan nad wirusami pietruszki i marchwi. I. Wirus czarnej pierscieniowej plamistosci pomidora (Tomato black ring virus) na marchwi. Zeszyty Probl Post Nauk Roln.; 226: 71-87 (in Polish).
• Twardowicz-Jakusz A, Kaniewski W, Dunajska-Zielinska L. (1977b) Badania diagnostyczne nad wirusami chrzanu. Zeszyty Probl Post Nauk Roln.; 195: 173-93 (in Polish).
• Zaccomer B, Haenni AL, Macaya G. (1995) The remarkable variety of plant RNA virus genomes. J Gen Virol.; 76: 231-47.