PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
1998 | 45 | 1 |

Tytuł artykułu

DNA interaction with biologically active metal ions. Cooperativity of metal ion binding at compacting of DNA

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The interaction of Cu2+, Mn2+ and Ca2+ ions with DNA in aqueous and water-ethanol solutions at different metal ion concentrations was studied by IR-spectroscopy. At sufficiently high DNA concentrations, DNA interaction with Cu2+, Ca2+ and Mn2+ ions results in compacting of DNA in the aqueous solutions. This process shows a very high cooperativity. In the presence of alcohol, DNA condensation takes place at much lower concentrations of metal ions used than in pure aqueous solution. Binding constants and cooperativity of the metal ion binding rise, and the non-monotonous dependencies of the binding degree, r, on the concentration of free metal ions, Cf , become pronounced. Binding isotherms take the S-like form similar to van der Waals isotherms for phase transitions of the liquid-vapour type. Cu2+ and Ca2+ ion binding to DNA in water-ethanol solutions also results in compacting of DNA macromolecule. The process is characterised by a high positive cooperativity and has a phase transition character.

Wydawca

-

Rocznik

Tom

45

Numer

1

Opis fizyczny

p.107-117,fig.

Twórcy

autor
  • National Academy of Sciences of Ukraine, 47 W.Lenin Ave., 310164, Kharkov, Ukraine
autor
autor
autor

Bibliografia

  • 1. Chaires, J.B. (1996) Dissecting the free en­ergy of drug binding to DNA. Anticancer Drug Design 11, 569-580.
  • 2. Chaires. J.B., Satyanarayana, S., Suh, D., Fokt, I., Przewloką, T. & Priebe, W. (1996) Parsing the free energy of anthracycline anti­biotic binding to DNA. Biochemistry 35, 2047-2053.
  • 3. Misra, V.K., Sharp, K.A., Friedman, R.A. & Honig, B. (1994) Salt effects on ligand-DNA binding. Minor groove binding antibiotics. J. Mol Biol 238, 245-263.
  • 4. Fritzsche, H., Wahnert, U., Chaires, J.B., Dattagupta, N., Schlessinger, F.B. & Crothers, D.M. (1987) Anthracycline antibiotics. Inter­action with DNA and nucleosomes and inhibi­tion of DNA synthesis. Biochemistry' 26, 1996-2000.
  • 5. Kornilova, S.V., Kapinos, L.E. & Blagoi, Yu.P. (1995) DNA interaction with manganese ions studied by infrared spectroscopy. Mol Biolo­gia 29, 57-64.
  • 6. Kornilova, S.V., Kapinos, L.E., Tomkova, A., Mishkovslui, P., Blagoi, Yu.P. & Bol'bukh, T.V. (1994) Study by infrared and Raman spectroscopy of the interaction of DNA with copper ions. Bioflzika 39, 423-436.
  • 7. Fritzsche, H. (1994) Infrared linear dichroism studies of DNA-drug complexes: Quantitative determination of the drug-induced restriction of the B-A transition. Nucleic Acids Res. 22, 787-791.
  • 8. Phillips, D.R & Carlyle, G.A. (1981) The effect of physiological levels of divalent metal ions on the interaction of daunomycin with DNA: Evidence of a ternary daunomycin-Cu -DNA complex. Biochem. Pharmacol 30, 2021- 2024.
  • 9. Arscott, P.G., Li, A.Z. & Bloomfield, V.A. (1990) Condensation of DNA by trivalent cati­ons. 1. Effects of DNA length and topology on the size and shape of condensed particles. Bio- polymers 30, 619-630.
  • 10. Plum, G.E., Arscott, P.G. & Bloomfield, V.A. (1990) Condensation of DNA by trivalent cati­ons. 2. Effects of cation structure. Biopolymers 30. 631-643.
  • 11. Bloomfield, V.A., He, S., Li, A.Z. & Arscott, P.B. (1991) Light scattering studies on DNA condensation. Biochem. Soc. Trans. 19, 496-511.
  • 12. Marquet, R. & Houssier, C. (1991) Thermody­namics of cation-induced DNA condensation. J. BiomoL Struct Dyn. 9, 159-167.
  • 13. Sen, D. & Crothers, D.M. (1986) Condensa­tion of chromatin: Role of multivalent cations. Biochemistry 25, 1495-1503.
  • 14. Sen, D. & Crothers, D.M. (1986) Influence of DNA-binding drugs on chromatin condensa­tion. Biochemistry 25, 1503-1509.
  • 15. Kal'vin, N. & Vel'yaminov, S. (1987) Quantita­tive measurements of water solution IR spec­tra. J. Appi Spectroscopy 4, 592-597.
  • 16. Dupuis, P. & Alex, S. (1989) FT-1R and Raman investigation of cadmium binding by DNA. In- org. Chun. Acta 157, 271-281.
  • 17. Jia. X., Zon, G. & Marzilli, L. (1991) Multinu-clear NMR investigation of Zn2' binding to a dodecamer oligodeoxyribonucleotide: Insights 13 from C NMR spectroscopy. Inorg. Chem. 30, 228-239.
  • 18. Froystein, N. & Sletten, E. (1991) The binding of manganese (II) and zinc (II) to the synthetic oligonucleotide d((XK>G-A-A-T-T-C-G-C-G)2. A lH NMR study. Acta Chem. Scand. 45. 219-225.
  • 19. Blagoi, Yu.P., Galkin, V.L., Gladchenko, G.O., Kornilova, S.V., Sorokin, V.A. & Shkorbatov, A.G. (1991) Metal complexes of nucleic acids in solutions. Naukova Dumka, pp. 1-272, Kiev (in Russian).
  • 20. Braunlin, W., Drakenberg, T. & Nordenskiold, L. (1987) A 43Ca NMR study of Ca (II>DNA in­teractions. Biopolymers 26, 1047.
  • 21. Fry, J. & Collins, J. (1997) NMR study of the sequence-specific binding of the delta-tris(eth- ylenediamine)cobalt(III) cation with d(TCGG- GATCCCGA)2. Inorg. Chem. 36,2919- 2921.
  • 22. Zimmer, Ch., Luck, G.. Fritzsche, H. &Triebel, H. (1971) DNA-copper(II) complex and the DNA conformation. Biopolymers 10, 441- 461.
  • 23. Maleev, V.Ya. & Semenov, M.A. (1971) Nu­cleic acids hyperchromism in infrared region. Biofizika 16, 389-397.
  • 24. Froystein, N., Davis, J., Reid, B. & Sletten, E. (1993) Sequence-selective metal ion binding to DNA oligonucleotides. Acta Chem. Scand, 47, 649-657.
  • 25. Pullman, A. & Pullman, B. (1981) Molecular electrostatic potential of the nucleic acids. Quart Rev. Biophys. 14, 289-315.
  • 26. Perathia, D., Pullman, A. & Pullman, B. (1977) Cation-binding to biomolecules. Theor. Chim. Acta 43. 207-219.
  • 27. Tajmir-Riahi, H.-A., Ahmad, R. & Naoui, M. (1993) Interaction of calf-thymus DNA with trivalent La, Eu, and Tb ions. Metal ion bind­ing, DNA condensation and structural fea­tures. J. BiomoL Struc. & Dyn. 10, 865-877.
  • 28. Landau, L.D. & Lifshuts, I.M., (1972) Statis- ticheskaja phisika. Nauka (in Russian).
  • 29. Reuben, J. & Gabbay, E.J. (1975) Binding of manganese (II) to DNA and competitive ef­fects of metal ions and organizing cations. An electron paramagnetic resonance study. Bio­chemistry 14,1230-1235.
  • 30. Hackl, E.V., Xornilova, S.V., Kapinos, L.E., Andrushchenko, V.V., Galkin, V.L., Grigoriev, D.N. & Blagci, Yu.P. (1997) Study of Ca2\ 2+- 2» Mn , Cu binding to DNA in solution by means of IR-spectroscopy. J. Mol. Struct 408-409, 229-232.
  • 31. Braunlin, W.H., Anderson, C.F. & Record, M.T., Jr. (1987) Competitive interactions of Co(NH3)6(3+) and Na+ with helical B-DNA probed by 59Co and 23Na NMR. Biochemistry 26, 7724-7731.
  • 32. Hanlon, S., Wolf, B., Berman, S. & Chan. A., (1977) The conformational sensitivity of DNA to ionic interaction in aqueous solutions; in Metal-Ligand Interactions in Organic Chemis­try and Biochemistry", Part 1, pp. 77-106, Dor­drecht, Holland.
  • 33.Sorokin. V.A., Blagoi. Yu.P.. Valeev, V.A., Kornilova, S.V., Gladchenko, G.O., Reva, I.D. & Sokhan, V.I. (1987) Studies of formation of bivalent cooper complex with native and dena­tured DNA. J. Inorg. Biochem, 80, 87-101.
  • 34. Wilson, R.W. & Bloomfield, V.A. (1979) Coun- terion-induced condensation of deoxyribonu­cleic acid. A light-scattering study. Biochemis­try 18,2192-2196.
  • 35. Wilson, R.W., Rau, D.C. & Bloomfield, V.A. (1980) Comparison of polyelectrolyte theories of the binding of cations to DNA. Biophys. J. 30, 317-325.
  • 36. Votavova, H., Kucerova, D., Felsberg, J. & Sponar, J. (1986) Changes in conformation, stability and condensation of DNA by univa­lent and divalent cations in methanol-water mixtures. J. Biomol Struct. & Dyn. 4, 477- 489.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-26f8e6c3-e6ec-4471-8807-49f310b5f177
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.