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1998 | 45 | 1 |

Tytuł artykułu

A method for isolation of plasmid DNA replication intermediates from unsynchronized bacterial cultures for electron microscopy analysis

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Electron microscopy is a powerful technique for analysis of DNA replication intermediates. However, isolation of replicating DNA molecules from living cells is tricky and difficult, especially in the case of small DNA molecules (such as bacterial plasmids) whose initiation of replication is not easily synchronized. Here a relatively simple and rapid method for efficient isolation of replicating plasmid molecules from unsynchronized Escherichia coli cultures is described. The efficiency of this procedure is high enough for electron microscopy analysis of plasmid replication intermediates appearing in living cells in normal growth conditions. Under optimal conditions, using standard procedures of isolation of plasmid DNA, it is possible to achieve a content of only as few as 0.02 percent of replication intermediates in a plasmid DNA sample. The described method allowed us to enrich up to 100-fold the fraction of replication intermediates suitable for microscopic analysis among all plasmid molecules.

Wydawca

-

Rocznik

Tom

45

Numer

1

Opis fizyczny

p.233-240,fig.

Twórcy

  • University of Gdansk, Kladki 24, 80-822 Gdansk, Poland
autor
autor

Bibliografia

  • 1. Learn, B., Karzai, A.W. & McMacken, R. (1993) Transcription stimulates the establish­ment of bidirectional A DNA replication in vi­tro. Cold Spring Harbor Symp. Quant Biol. 58, 389-402.
  • 2. Caro, L., Churchward, G. & Chandler, M. (1984) Study of plasmid replication in vivo; in Metiiods in Microbiology (Bennett, P.M. & Grinsted, J., eds.) 17, pp. 97-122, Academic Press, London.
  • 3. Nordstrom, K. & Austin, S.J. (1993) Cell-cycle- specific initiation of replication. Mol. Micro- bioL 10, 457-463.
  • 4. Eichenlaub, R. (1984) Localization of origins of plasmid DNA replication; in Advanced Mo­lecular Genetics (Puhler, A. & Timmis, K.N., eds.) pp. 316-324, Springer-Verlag, Berlin- Heidelberg.
  • 5. Jensen, K.F. (1993) The Escherichia coli "wild types" W3110 and MG1655 have an rph frame- shift mutation that leads to pyrimidine starva­tion due to low pyrE expression levels. J. Bacte- rioL 175, 3401-3407.
  • 6. Węgrzyn, G., Węgrzyn, A., Konieczny, I., Bie­lawski, K., Konopa, G., Obuchowski, M., Helin- ski, D.R. & Taylor, K. (1995) Involvement of the host initiator function dnaA in the replica­tion of coliphagex. Genetics 139,1469-1481.
  • 7. Węgrzyn, A., Węgrzyn, G. & Taylor, K. (1995) Plasmid and host functions required for A plas­mid replication carried out by the inherited replication complex. Mol Gen. Genet. 247, 501-508.
  • 8. Boyd, A.C. & Sherratt, D.J. (1995) The CLIP plasmids: Versatile cloning vectors based on the bacteriophage A origin of replication. Gene 153, 57-62.
  • 9. Szalewska, A., Węgrzyn, G. & Taylor, K. (1994) Neither absence nor excess of A 0 initiator-digesting ClpXP protease affects ?. plasmid or phage replication in Escherichia coli. Mol. Microbiol 13, 469-474.
  • 10. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular Cloning: A Laboratory Man­ual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
  • 11. Burkardt, H. & Lurz, R. (1984) Electron mi­croscopy; in Advanced Molecular Genetics (Puhler, A. & Timmis, K.N., eds.) pp. 281-313, Springer-Verlag, Berlin-Heidelberg.
  • 12. Guerry, P., LeBlanc, D.J. & Falków, S. (1973) General method for the isolation of plasmid deoxyribonucleic acid. J. Bacterial. 116, 1064-1066.
  • 13. Wu, J.-R. & Gilbert, D.M. (1995) Rapid DNA preparation for 2D gel analysis of replication intermediates. Nucleic Acids Res. 23, 3997- 3998.
  • 14. Węgrzyn, G. (1995) Amplification of A Plas­mids in Escherichia coli rei A mutants. J. Bio- technoL 43, 139-143.
  • 15. Berg, C.M., Liu, L., Coon, M., Strausbaugh, L.D., Gray, P., Vartak, N.B., Brown, M., Tal­bot, D. & Berg, D.E. (1989) pBR322-derived multicopy Plasmids harboring large inserts are often dimers in Escherichia coli K-12. Plas­mid 21, 138-141.
  • 16. Thomas, C.M. (1987) Plasmid replication; in Plasmids, A Practical Approach (Hardy, K.G., ed.) pp. 7-35, IRL Press, Oxford.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-article-17f7bdba-2444-4596-93b5-1117bc76d36e
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