PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
2016 | 51 |
Tytuł artykułu

Isolation and computational characterization of glutathione peroxidase gene from an aquatic fern - Salvinia molesta

Treść / Zawartość
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Pteridophytes and more specifically ferns represent a large but threatened group of plants which often serve as important environmental markers for pollution. Reports regarding stress responses in ferns are rare, apart from a few studies involving the ecological distribution and molecular marker studies. This work isolates a glutathione peroxidase enzyme from an aquatic fern widely distributed in fresh and polluted water bodies adjacent to sources of environmental polluted sources. Further computational analyses were performed to study the structure of the protein encoded by the open reading frame. Results indicate the presence of a large number of binding pockets which serve as important binding sites in the interactions with the cognate ligands.
Słowa kluczowe
Wydawca
-
Rocznik
Tom
51
Opis fizyczny
p.58-62,fig.,ref.
Twórcy
autor
  • Department of Botany, Bangabasi Evening College, Kolkata, India
autor
  • Computational Biology Division, The Biome, Kolkata, India
autor
  • Computational Biology Division, The Biome, Kolkata, India
autor
  • Post Graduate Department of Botany, Barasat Government College, Kolkata, India
autor
  • Block Development Office, Taldangra, District Bankura, West Bengal, India
autor
  • Amplicon Biosciences Pvt. Ltd. Palta - 743122, India
Bibliografia
  • [1] D.S. Mitchell, Brit. Fern Gaz. (1972) 10(5): 251-252.
  • [2] S. Phetsombat,M. Kruatrachue, P. Pokethitiyook,S. Upatham , J Environ Biol. (2006)(4):645-52.
  • [3] S. Ganguli,S. Gupta, A. Bhowmick, J. Ansari and M. Basu, Indian Science Cruiser (2008) page 38-45
  • [4] S. Ganguli, A. Datta, International Letters of Natural Sciences, Vol. 7,(2013),pp. 49-62,
  • [5] J.A. Bryant, DNA extraction, p. 1-12.In P.M. Dey and J.B. Harborne (Eds.), Methods in Plant Biochemistry, (1997),Vol. 10b. Academic Press, San Diego
  • [6] C.S. Kim,C.H. Lee, J.S. Shin, Y.S. Chungand, N.I. Hyung, NucleicAcids Res. (1997) 25:1085-1086.
  • [7] P. Technelysium, Chromas lite 2.01. (2007), http://www. technelysium.com.au/chromas_lite. html
  • [8] M.D. Bethesda, National Center for Biotechnology Information (US); (2011)-. Available from: http://www.ncbi.nlm.nih.gov/books/NBK51157/
  • [9] F. S. Altschul, , W. Gish,W. Miller,W.E. Myers, and J.D. Lipman, (1990) J. Mol. Biol. 215:403-410
  • [10] N. Saitou , M. Nei ,Molecular Biology and Evolution, 4(4), (1987) pp. 406-425,
  • [11] ORF Finder, http://www.ncbi.nlm.nih.gov/gorf/gorf.html
  • [12] W.D. Cornell,P. Cieplak,C.I. Bayly,I.R. Gould,K.M. Merz, D.M. Ferguson,D.C. Spellmeyer,T Fox, J.W. Caldwell,P.A. Kollman,J. Am. Chem. Soc. (1995)117: 5179–5197.
  • [13] B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus.
  • [14] J. Comp. Chem. 4, (1983),187-217
  • [15] R.A. Laskowski, M.W. MacArthur, D.S. Moss ,J.M. Thornton, J. App. Cryst., 26, (1993), 283-291
  • [16] P. Benkert ,M. Künzli,T. Schwede , Nucleic Acids Res. 1;37 (2009):W510-4
  • [17] D. La, J. E. Rodriguez, V. Venkatraman, B. Li, L. Sael, S. Ueng, S. Ahrendt, and D. Kihara. Bioinformatics 25: (2009)2843-2844.
  • [18] J. Dundas, Z. Ouyang, J. Tseng, A. Binkowski, Y. Turpaz, and J. Liang., Nucleic Acid Research, 34: ( 2006),W116-W118.
  • [19] G. M.Morris, R.Huey,W. Lindstrom, M. F. Sanner,R.K. Belew,D.S. Goodsell and A.J. Olson, J. Computational Chemistry (2009), 16: 2785-91
  • [20] A.C. Wallace, R .A.Laskowski, J.M. Thornton, Protein Eng., 8, (1996). 127-134.
  • [21] S.Ganguli,A.Datta, American Journal of Bioinformatics Research (2015), 5(1): 9-15
  • DOI References
  • [4] S. Ganguli, A. Datta, International Letters of Natural Sciences, Vol. 7, (2013), pp.49-62. 10.18052/www.scipress.com/ilns.7.49
  • [9] F. S. Altschul, , W. Gish,W. Miller W.E. Myers, and J.D. Lipman, (1990) J. Mol. Biol. 215: 403-410. 10.1016/s0022-2836(05)80360-2
  • [12] W.D. Cornell,P. Cieplak C.I. Bayly I.R. Gould K.M. Merz, D.M. Ferguson D.C. Spellmeyer, T Fox, J.W. Caldwell P.A. Kollman,J. Am. Chem. Soc. (1995)117: 5179-5197. 10.1021/ja00124a002
  • [13] B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 10.1002/jcc.540040211
  • [16] P. Benkert ,M. Künzli,T. Schwede , Nucleic Acids Res. 1; 37 (2009): W510-4. 10.1093/nar/gkp322
  • [17] D. La, J. E. Rodriguez, V. Venkatraman, B. Li, L. Sael, S. Ueng, S. Ahrendt, and D. Kihara. Bioinformatics 25: (2009)2843-2844. 10.1093/bioinformatics/btp542
  • [18] J. Dundas, Z. Ouyang, J. Tseng, A. Binkowski, Y. Turpaz, and J. Liang., Nucleic Acid Research, 34: ( 2006), W116-W118. 10.1093/nar/gkl282
  • [19] G. M. Morris, R. Huey,W. Lindstrom, M. F. Sanner R.K. Belew D.S. Goodsell and A.J. Olson, J. Computational Chemistry (2009), 16: 2785-91. 10.1002/jcc.21256
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.agro-a9916e21-c89b-428c-b066-a1e594d64b58
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.