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2016 | 19 | 4 |

Tytuł artykułu

Correlation between peripheral blood cell transcriptomic profile and clinical parameters of chronic mitral valve disease in Dachshunds

Treść / Zawartość

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Studies identifying specific pathologically expressed genes have been performed on diseased myocardial tissue samples, however less invasive studies on gene expression of peripheral blood mononucleated cells give promising results. This study assessed transcriptomic data that may be used to evaluate Dachshunds with chronic mitral valve disease. Dachshunds with different stages of heart disease were compared to a control, healthy group. Microarray data analysis revealed clusters of patients with similar expression profiles. The clusters were compared to the clinical classification scheme. Unsupervised classification of the studied groups showed three clusters. Clinical and laboratory parameters of patients from the cluster 1 were in accordance with those found in patients without heart disease. Data obtained from patients from the cluster 3 were typical of advanced heart failure patients. Comparison of the cluster 1 and 3 groups revealed 1133 differentially expressed probes, 7 significantly regulated process pathways and 2 significantly regulated Ariadne Metabolic Pathways. This study may serve as a guideline for directing future research on gene expression in chronic mitral valve disease.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

19

Numer

4

Opis fizyczny

p.849-857,fig.,ref.

Twórcy

autor
  • Department of Veterinary Diagnostics and Pathology, Faculty of Veterinary Medicine, Warsaw University of Life Sciences, Warsaw, Nowoursynowska159, 02-766 Warsaw, Poland
autor
  • Department of Physiological Sciences, Faculty of Veterinary Medicine, Warsaw University of Life Sciences, Warsaw, Poland
  • Institute of Computer Engineering, Control and Robotics (I-6), Wroclaw University of Technology, Wroclaw, Poland
  • Department of Veterinary Diagnostics and Pathology, Faculty of Veterinary Medicine, Warsaw University of Life Sciences, Warsaw, Nowoursynowska159, 02-766 Warsaw, Poland
autor
  • Veterinary Institute, Faculty of Veterinary Medicine and Animal Sciences, Poznan University of Life Sciences, Poznan, Poland

Bibliografia

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  • Disatian S, Ehrhart EJ 3rd, Zimmerman S, Orton EC (2008) Interstitial cells from dogs with naturally occurring myxomatous mitral valve disease undergo phenotype transformation. J Heart Valve Dis 17: 402-411.
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  • Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Iriyarrz RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oles AK, Pages H, Rezes A, Shannon P, Smzth GK, Tenenbaum D, Waldron L, Morgan M (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nat Methods 12: 115-121.
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  • Madsen MB, Olsen LH, Haggström J, Hoglund K, Ljungvall I, Falk T, Wess G, Stephenson H, Dukes-McEwan J, Chetboul V, Gouni V, Proschowsky HF, Cirera S, Karlskov-Mortensen P, Fredholm M (2011) Identification of 2 loci associated with development of myxomatous mitral valve disease in Cavalier King Charles Spaniels. J Hered (Suppl 1): S62-67.
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  • Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK (2015) Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 43: e47.
  • Seiler PU, Stypmann J, Breithardt G, Schulze-Bahr E (2004) Real-time RT-PCR for gene expression profiling in blood of heart failure patients – a pilot study: gene expression in blood of heart failure patients. Basic Res Cardiol 99: 230-238.
  • Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: 1-25.
  • Stern JA, Hsue W, Song KH, Ontiveros ES, Luis Fuentes V, Stepien RL (2015) Severity of Mitral Valve Degeneration Is Associated with Chromosome 15 Loci in Whippet Dogs. PLoS One; 10: e0141234.
  • Szmit S, Jank M, Maciejewski H, Balsam P, Majewska A, Łój M, Grabowski M, Filipiak KJ, Motyl T, Opolski G (2012) White blood cell transcriptome correlates with renal function in acute heart failure. Int Heart J 53: 117-124.
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Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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