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2002 | 07 | 2A |

Tytuł artykułu

New DNA markers for discrimination between closely-related species and for the reconstruction of historical events; an example using liverworts

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
A survey of fully-sequenced chloroplast genomes revealed that in land plants there are six tRNA genes that have introns. Moreover, the length of a particular tRNA gene intron remains relatively stable across species. However, in algae, the presence of chloroplast tRNA genes containing introns is exceptional. A survey of mitochondrial plant genomes revealed intron-containing tRNA genes are rather rare features, with the exception of tRNASerGCU genes in liverworts and peat-mosses. We isolated and sequenced one mitochondrial and three chloroplast intron-containing tRNA genes and a fragment of the mitochondrial coxIII gene containing the first intron from the following liverwort species: Pellia borealis, Pellia epiphylla-species N, Pellia epiphylla-species S and Porella baueri, Porella cordaeana, Porella platyphylla. We showed that, as in the case of higher plants, the rate of nucleotide substitution is lower in the mitochondrial genome than in the chloroplast genome. Moreover, the comparison of intron nucleotide sequences enabled us to show that in the case of one allopolyploid species, Pellia borealis, organelles were transmitted from one parent species, Pellia epiphylla-species N. In the case of another allopolyploid species, Porella baueri, organelles were also inherited from one parent species, Porella cordaeana. Therefore, organellar inheritance in liverworts seems to be uniparental. It remains clear that analysis of carefully chosen chloroplast and mitochondrial DNA sequences allowed us to reconstruct historical events.

Wydawca

-

Rocznik

Tom

07

Numer

2A

Opis fizyczny

p.403-416,fig.,ref.

Twórcy

  • Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Miedzychodzka 5, 60-371 Poznan, Poland
autor
  • Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Miedzychodzka 5, 60-371 Poznan, Poland
autor
  • Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Miedzychodzka 5, 60-371 Poznan, Poland

Bibliografia

  • 1. Palmer, J. D and Delwiche, C. F. The origin and Evolution of Plastids and Their Genomes. In: Molecular Systematics of Plants II (Soltis, D. E., Soltis, P. S., Doyle, J. J ., Eds.), Kluwer Academic Publishers, 1998, 375-409.
  • 2. Gillham, N. W. Organelle Genome Organization and Gene Content. In: Organelle Genes and Genomes (Gillham, N. W., Ed), Oxford University Press, 1994, 50-91.
  • 3. Jańska, H. and Wołoszyńska, M. The dynamic nature of plant mitochondrial genome organization. Acta Biochim. Polon. 44 (1997) 239-250.
  • 4. Wolfe, K. H., Li, W.-H. and Sharp, P. M. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. USA 84 (1987) 9054-9058.
  • 5. Palmer, J. D. and Herbon, L. A. Plant mitochondrial DNA evolves rapidly in structure, but slow in sequence. J. Mol. Evol. 28 (1988) 87-97.
  • 6. Oda, K., Yamato, K., Ohta, E., Nakamura, Y., Takemura, M., Nozato, N., Akashi, K., Kanegae, T., Ogura, Y., Kohchi, T. and Ohyama, K. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. J. Mol. Biol. 223 (1992) 1-7.
  • 7. Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, Z., Inokuchi, H. and Ozeki, H. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature (London) 322 (1986) 572-574.
  • 8. Lukavsky, J., Kasparkova, M. and Keil, M. Culture collection of mosses and ferns. Bryol. Times 64 (1991) 8-9.
  • 9. Murashige, T. and Skoog, F. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15 (1962) 473-497.
  • 10. Fiedorow, P. and Szweykowska-Kulińska, Z. In vitro collection of Polish liverworts species of genus Pellia Radii 1820 (Hepaticae, Metzgeriales). Biol. Bull. Poznań 35 (1998) 33-37.
  • 11. Fiedorow, P. and Szweykowska-Kulińska, Z. The influence of polyamines on polymerase chain reaction (PCR). Acta Biochim. Polon. 44 (1997) 83-88.
  • 12. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882.
  • 13. http://www.ncbi.nlm.nih.gov.
  • 14. Odrzykoski, I., Chudzińska, E. and Szweykowski, J. The hybrid origin of the polyploid liverwort Pellia borealis. Genetica 4 (1996) 1-12.
  • 15. Fiedorow, P., Odrzykoski, I., Szweykowski, J. and Szweykowska-Kulińskia, Z. Phylogeny of the European species of the genus Pellia (Hepaticae, Metzgeriales) based on the molecular data from nuclear tRNALeu (CAA) intergenic sequences. Gene 262 (2001) 309-315.
  • 16. Boisselier-Dubayle, M. C., Lambourdiere, J. and Bishler, H. The leafy liverwort Porella baueri (Porellaceae) is an allopolyploid. Pl. Syst. Evol. 210 (1998) 175-197.
  • 17. Meissner, K., Frahm, J-P., Stech, M. and Frey, W. Molecular divergence and infrageneric relationship of Monoclea (Monocleales, Hepaticae). Nova Hedwigia 67 (1998) 289-302.
  • 18. Paulsrud, P. and Lindblad, P. Sequence variation of the tRNALeu intron as a marker for genetic diversity and specificity of symbiotic cyanobacteria in some lichens. Appl. Environm. Microbiol. 64 (1998) 310-315.
  • 19. Pacak, A. and Szweykowska-Kulińska, Z. Molecular data concerning alloploid character and the origin of chloroplast and mitochondrial genomes in the liverwort species Pellia borealis. J. Plant Biotechnol. 2 (2000) 101-108.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

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