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2018 | 40 | 02 |

Tytuł artykułu

Transcriptomic responses in Neolitsea sericea leaves under acute drought stress

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
Neolitsea sericea is acclimated to arid islands, but few studies have examined its responses to water stress. To look into the defending responses that assist N. sericea seedlings to survive drought, physiological and transcriptomic analysis of leaves was conducted after drought was induced. Over 17,768,244 reads for each sample were generated, totalling over 4400 million base pairs (bp). Among 129,239 unigenes that were assembly yielded with an average length of 816 bp, 51,137 of them (39.6%) were annotated successfully. Under severe drought, physiological inhibition was strengthened and abscisic acid content was significantly upregulated. The responses were strongly accompanied by transcriptional regulation of genes participating in stress perception, protective signalling, hormone metabolism, transcription factors, abiotic stress, transport, and degradation. In total, 61, 65, and 67 differentially expressed genes were identified after 12, 24, and 72 h exposure to severe drought stress, respectively. Gene Ontology and MapMan functional enrichment analysis revealed that the most upregulated genes were involved in protein transport, the regulation of transcription, and miscellaneous enzyme families. In addition, genes that encode glycosyl transferase and UDP-glycosyltransferases may modulate the drought-stress responses of N. sericea. Multiple hormones were active in N. sericea leaves during drought stress, including those associated with auxins, abscisic acid, brassinosteroid, and cytokinins. Transcription factors, including AtbHLH112, AtCOL4, AtZFP3, AtCIR1, and AtCCA1, may participate in ABA signal transduction in drought-treated N. sericea. The present study elucidates how N. sericea make transcriptomic responses to drought stress, helping to reveal the molecular mechanisms connected to drought adaptation.

Słowa kluczowe

Wydawca

-

Rocznik

Tom

40

Numer

02

Opis fizyczny

Article 22 [13p.], fig.,ref.

Twórcy

autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China
autor
  • National Engineering Research Centre of Maricultural Facilities of China, College of Marine Science and Technology, Zhejiang Ocean University, Haida South Road 1, Zhoushan 316022, Zhejiang, China

Bibliografia

  • Ahrazem O, Moraga AR, Mozos AT, Climent MFL, Cadenas AG, Gómez LG (2015) Ectopic expression of a stress-inducible glycosyltransferase from saffron enhances salt and oxidative stress tolerance in Arabidopsis while alters anchor root formation. Plant Sci 234:60–73
  • Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11:R106
  • Arve LE, Terfa MT, Gislerød HR, Olsen JE, Torre S (2013) High relative air humidity and continuous light reduce stomata functionality by affecting the ABA regulation in rose leaves. Plant Cell Environ 36:382–392
  • Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W (2012) Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol 8(1):606
  • Carvalho DRA, Vasconcelos MW, Lee S, Carole FS, Koning-Boucoiran CFS, Vreugdenhil D, Krens FA, Heuvelink E, Carvalho SMP (2016) Gene expression and physiological responses associated to stomatal functioning in Rosa × hybrida grown at high relative air humidity. Plant Sci 253:154–163
  • Chaves MM, Maroco JP, Pereira JS (2003) Understanding plant responses to drought—from genes to the whole plant. Funct Plant Biol 30:239–264
  • Chen LY, Cao YN, Yuan N, Nakamura K, Wang GM, Qin YX (2015) Characterization of transcriptome and development of novel EST-SSR makers based on next-generation sequencing technology in Neolitsea sericea (Lauraceae) endemic to East Asian land-bridge islands. Mol Breed 35:187
  • Chung MG, Chung MY, Oh GS, Epperson BK (2000) Spatial genetic structure in a Neolitsea sericea population (Lauraceae). Heredity 85:490–497
  • D’Antonio CM, Dudley TL (1995) Biological invasions as agents of change on islands versus mainlands. In: Vitousek PM, Loope LL, Adsersen H (eds) Islands: biological diversity and ecosystem function. Springer, Berlin, pp 103–121
  • David V, Isabel S, Andrew D (2014) The role of protein clearance mechanisms in organismal ageing and age-related diseases. Nat Commun 5:5659
  • Ding F, Zhang C (2001) Investigation report on Neolitsea sericea resources in Zhoushan. J Zhejiang For Sci Technol 21:52–54
  • Düring H (1984) Evidence for osmotic adjustment to drought in grapevines (Vitis vinifera L.). Vitis 23:1–10
  • El Sayed AI, Rafudeen MS, Golldack D (2014) Physiological aspects of raffinose family oligosaccharides in plants: protection against abiotic stress. Plant Biol 16(1):1–8
  • Fernandez O, Béthencourt L, Quero A, Sangwan RS, Clément C (2010) Trehalose and plant stress responses: friend or foe? Trends Plant Sci 15:409–417
  • Francisco-Ortega J, Santos-Guerra A, Kim SC, Crawford J (2000) Plant genetic diversity in the Canary Islands: a conservation perspective. Am J Bot 87(7):909–919
  • Fu LG (1992) Chinese plant red book. Science Press, Beijing
  • Gawronska H, Deji A, Sakakibara H, Sugiyama T (2003) Hormonemediated nitrogen signaling in plants: implication of participation of abscisic acid in negative regulation of cytokinin-inducible expression of maize response regulator. Plant Physiol Biochem 41:605–610
  • Gigon A, Matos AR, Laffiray D, Zuily-Fodil Y, Pham-Thi AT (2004) Effect of drought stress on lipid metabolism in the leaves of Arabidopsis thaliana (ecotype Columbia). Ann Bot 94(3):345–351
  • Görner W, Durchschlag E, Martinez-Pastor MT, Estruch F, Ammerer G, Hamilton B, Ruis H, Schüller C (1998) Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. Genes Dev 12:586–597
  • Grabherr MG et al (2011) Full length transcriptome assembly from RNA Seq data without a reference genome. Nat Biotechnol 29:644–652
  • Harris MA et al (2004) The gene ontology (GO) database and informatics resource. Nucleic Acids Res 32:D258
  • Hata K, Kawakami K, Kachi N (2016) Increases in soil water content after the mortality of non-native trees in oceanic island forest ecosystems are due to reduced water loss during dry periods. Sci Total Environ 545:372–382
  • Huang J, Sun SJ, Xun DQ, Yang X, Bao YM, Wang ZF, Tang HJ, Zhang HS (2009) Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochem Biophys Res Commun 389(3):556–561
  • Joseph MP, Papdi C, Kozma-Bognár L, Nagy I, López-Carbonell M, Koncz C, Szabados L (2014) The Arabidopsis zinc finger protein 3 interferes with ABA and light signaling in seed germination and plant development. Plant Physiol 165(3):1203–2220
  • Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28:27–30
  • Kerepesi I, Galiba G (2000) Osmotic and salt stress-induced alteration in soluble carbohydrate content in wheat seedlings. Crop Sci 40:482–487
  • Lawlor DW (2013) Genetic engineering to improve plant performance under drought: physiological evaluation of achievements, limitations, and possibilities. J Exp Bot 64:83–108
  • Lee SS, Yang HC (1992) Isoquinoline alkaloids from Neolitsea Konishii. J Chin Chem Soc (Taip) 39(2):189–194
  • Lee S, Seo CH, Lim B, Yang JO, Oh J, Kim M, Lee B, Kang C, Lee S (2011) Accurate quantification of transcriptome from RNA-Seq data by effective length normalization. Nucleic Acids Res 39(2):e9
  • Lee HG, Mas P, Seo PJ (2016) MYB96 shapes the circadian gating of ABA signaling in Arabidopsis. Sci Rep 6:17754
  • Li WS (1992) Sesquiterpene lactones from the Root of Neolitsea acutotrinervia. J Nat Prod 55(11):1614–1619
  • Li YL, Jiang KH, Xu LQ, Du GJ, Yang H (2008) Growth and physiological effect under salt stress of Neolitsea sericea. J Zhejiang For Sci Technol 28(2):49–51
  • Liu Y, Ji X, Nie X, Qu M, Zheng L, Tan Z, Zhao H, Huo L, Liu S, Zhang B, Wang Y (2015) Arabidopsis AtbHLH112 regulates the expression of genes involved in abiotic stress tolerance by binding to their E-box and GCG-box motifs. New Phytol 207(3):692–709
  • Maunder M, Culham A, Hankamer C (1998) Picking up the pieces: botanical conservation on degraded oceanic islands. In: Fiedler PL, Fiedler PL, Kareiva PM (eds) Conservation biology: for the coming decade, 2nd edn. Chapman and Hall, New York, pp 317–344
  • Mazel A, Levine A (2002) Induction of glucosyltransferase transcription and activity during superoxide-dependent cell death in Arabidopsis plants. Plant Physiol Biochem 40(2):133–140
  • Meissner D, Albert A, Bottcher C, Strack D, Milkowski C (2008) The role of UDP-glucose: hydroxycinnamate glucosyltransferases in phenylpropanoid metabolism and the response to UV-B radiation in Arabidopsis thaliana. Planta 228(4):663–674
  • Min JH, Chung JS, Lee KH, Kin CS (2015) The CONSTANS-like 4 transcription factor, AtCOL4, positively regulates abiotic stress tolerance through an abscisic acid-dependent manner in Arabidopsis. J Integr Plant Biol 57(3):313–324
  • Morano KA (2007) New tricks for an old dog: the evolving world of Hsp70. Ann NY Acad Sci 1113:1–14
  • Moriguchi Y, Yamanaka H, Ohdan T, Fuji SI (2016) Development and characterization of polymorphic microsatellite markers for Neolitsea sericea using Illumina paired-end draft sequencing data. Plant Species Biol 31(2):163–166
  • Nelson DC, Scaffidi A, Dun EA, Waters MT, Flematti GR, Dixon KW, Beveridge CA, Ghisalberti EL, Smith S (2011) F-box protein MAX2 has dual roles in karrikin and strigolactone signaling in Arabidopsis thaliana. Proc Natl Acad Sci 108(21):8897–8902
  • Okamoto M, Tanaka Y, Abrams SR, Kamiya Y, Seki M, Nambara E (2009) High humidity induces abscisic acid 8′-hydroxylase in stomata and vasculature to regulate local and systemic abscisic acid responses in Arabidopsis. Plant Physiol 149:825–834
  • Padmalatha KV, Dhandapani G, Kanakachari M, Kumar S, Dass A, Patil DP, Rajamani V, Kumar K, Pathak R, Rawat B, Leelavathi S, Reddy PS, Jain N, Powar KN, Hiremath V, Katageri IS, Reddy MK, Solanke AU, Reddy VS, Kumar PA (2012) Genomewide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes. Plant Mol Biol 78:223–246
  • Peleg Z, Blumwald E (2011) Hormone balance and abiotic stress tolerance in crop plants. Curr Opin Plant Biol 14:290–295
  • Raghavendra AS, Gonugunta VK, Christmann A, Grill E (2010) ABA perception and signalling. Trends Plant Sci 15:395–401
  • Rieseberg LH, Swensen SM (1996) Conservation genetics of endangered island plants. In: Avise JC, Hamrick JL (eds) Conservation genetics: cases histories from nature. Chapman and Hall, New York, pp 305–334
  • Rose R, Schaller A, Ottmann C (2010) Structural features of plant subtilases. Plant Signal Behav 5(2):180–183
  • Shackelford N, Hobbs RJ, Burgar JM, Erickson TE, Fontaine JB, Laliberté E, Ramalho CE, Perring MP, Standish RJ (2013) Primed for change: developing ecological restoration for the 21st century. Restor Ecol 21:297–304
  • Suding KN (2011) Toward an era of restoration in ecology: successes, failures, and opportunities ahead. Annu Rev Ecol Evol Syst 42:465–487
  • Sun YG, Wang B, Jin SH, Qu XX, Li YJ, Hou BK (2013) Ectopic expression of Arabidopsis glycosyltransferase UGT85A5 enhances salt stress tolerance in tobacco. PLoS One 8:e59924
  • Taji T, Ohsumi C, Iuchi S, Seki M, Kasuga M, Kobayashi M, Yamaquchi-Shinozaki K, Shinozaki K (2002) Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J 29:417–426
  • Tan W, Blake TJ, Boyle TJB (2006) Drought tolerance in faster-and slower-growing black spruce (Picea mariana) progenies: II. Osmotic adjustment and changes of soluble carbohydrates and amino acids under osmotic stress. Physiol Plant 85:645–651
  • Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29:22–28
  • Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37:914–939
  • Tognetti VB, Van Aken O, Morreel K, Vandenbroucke K, van de Cotte B, De Clercq I, Chiwocha S, Fenske R, Prinsen E, Boerjan W, Genty B, Stubbs KA, Inze D, Van Breusegem F (2010) Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance. Plant Cell 22:2660–2679
  • Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inze D, Van Breusegem F (2005) Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol 139:806–821
  • Wang ZS (2005) Genetic structure of the endangered plant Neolitsea sericea (Lauraceae) from the Zhoushan archipelago using RAPD markers. Ann Bot (London) 95:305–313
  • Wang W, Huang SL, Ding GJ, Huang YJ, Huang JQ, Zheng BS (2007) Morphological and physiological changes accompanying the induction of salt tolerance in Neolitsea sericea seedlings. J Zhejiang For Coll 24(2):168–172
  • Wang W, Wang Y, Zhang Q, Qi Y, Guo D (2009) Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing. BMC Genom 10:465
  • Wilson EO (1992) The diversity of life. Norton, New York
  • Wu YY, Chen S, Zhang YZ, Wang L, Wang ZH (2009) Effect of heavy metal stress on physiological and biochemical characteristics of five evergreen broad-leaved trees. J Nucl Agric Sci 23(5):843–852
  • Yuan XC, Zhang XM, He WZ, Gao DH, Fei XH, Chen B, Lu Z, Yu QJ (2015) Experiment on afforestation of three tree species on islands of Zhoushan. J Zhejiang For Sci Technol 35(1):69–71
  • Zhai SN, Yan XY, Nakamura K, Mishima M, Qiu YX (2010) Isolation of compound microsatellite markers for the endangered plant Neolitsea sericea (Lauraceae). Am J Bot 97:e139–e141
  • Zhai SN, Comes HP, Nakamura K, Yan HF, Qiu YX (2012) Late pleistocene lineage divergence among populations of Neolitsea sericea (Lauraceae) across a deep sea-barrier in the Ryukyu Islands. J Biogeogr 39:1347–1360
  • Zhao Y, Wang GM, Wang MQ, Zhang L, Qiu HC (2013) Relationship between proline and chlorophyll content with tree resistance. J Zhejiang For Sci Technol 33(5):36–39
  • Zhou LN, Qu D, Shao LL, Yi WJ (2005) Effects of sulfur fertilization on the contents of photosynthetic pigments and MDA under drought stress. Acta Bot Boreali-occidentalia Sinica 25(8):1579
  • Zhu YN, Shi DQ, Ruan MB, Zhang LL, Meng ZH, Liu J, Yang WC (2013) Transcriptome analysis reveals crosstalk of responsive genes to multiple abiotic stresses in cotton (Gossypium hirsutum L.). PLoS One 8(11):1–13

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Bibliografia

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