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Czasopismo

2013 | 58 | 2 |

Tytuł artykułu

Metabolomics and protozoan parasites

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
In this review, we examine the state-of-the-art technologies (gas and liquid chromatography, mass spectroscopy and nuclear magnetic resonance, etc.) in the well-established area of metabolomics especially as they relate to protozoan parasites.

Wydawca

-

Czasopismo

Rocznik

Tom

58

Numer

2

Opis fizyczny

p.127-131,ref.

Twórcy

autor
  • Department of Chemistry, Lehman College, City University of New York Bronx, NY 10468, USA
autor
autor
autor

Bibliografia

  • Baker M. 2013. The ‘omes’ puzzle. Nature, 494, 416–419. DOI: 10.1038/494416a.
  • Besteiro S., VoDuy S., Perigaud C., Lefebvre-Tournier I., Vial H. 2010. Exploring metabolomic approaches to analyze phospholipid biosynthetic pathways in Plasmodium. Parasitology, 137, 1343–1356. DOI: http://dx.doi.org/10.1017/S0031182009991934.
  • Brauer M., Yuan J., Bennett B., Lu W., Kimball E., Botstein D., Rabinowitz J. 2006. Conservation of the metabolomic response to starvation across two divergent microbes. Proceedings of National Academy of Science of United States of America, 103, 19302–19307. DOI: 10.1073/pnas.0609508103.
  • Cho K., Shibato J., Agrawal G., Jung Y., Kubo A., Jwa N., Tamogami S., Satoh K., Kikuchi S., Higashi T., Kimura S., Saji H., Tanaka Y., Iwahashi H., Masuo Y., Rakwal R. 2008. Integrated transcriptomics, proteomics and metabolomics analyses to survey ozone responses in the leaves of rice seedling. Journal of Proteome Research, 7, 2980–2998. DOI: 10.1021/pr800128q.
  • Creek D., Anderson J., McConville M., Barrett M. 2012. Metabolomic analysis of trypanosomatid protozoa. Molecular and Biochemical Parasitology, 181, 73–84. DOI: org/10.1016/j.molbiopara.2011.10.003.
  • Holmes E. 2010. The evolution of metabolic profiling in parasitology. Parasitology, 137, 1437–1449. DOI:http://dx.doi.org/10.1017/S0031182010000260.
  • Husain A., Sato D., Jeelani G., Mi-ichi F., Ali V., Suematsu M., Soga T., Nozaki T. 2010. Metabolome analyses revealed increase in S-methylcysteine and phosphatidylisopropanolamine synthesis upon L-cysteine deprivation in the anaerobic protozoan parasite Entamoeba histolytica. Journal of Biological Chemistry, 285, 39160–39170. DOI: 10.1074/jbc.M110.167304.
  • Jeelani G., Sato D., Husain A., Escueta-de Cadiz A., Sugimoto M. Soga T., Suematsu M., Nozaki T. 2012. Metabolic profiling of the protozoan parasite Entamoeba invadens revealed activation of unpredicted pathway during encystation. PLoS ONE, 7, e37740. DOI: 10.1371/journal.pone.0037740.
  • Kafsack B., Llinás M. 2010. Eating at the table of another: metabolomics of host-parasite interactions. Cell Host & Microbe, 7, 90–99. DOI: http://dx.doi.org/10.1016/j.chom.2010.01.008.
  • Khoo S., Al-Rubeai M. 2007. Metabolomics as a complementary tool in cell culture. Biotechnology and Applied Biochemistry, 47, 71–84. DO:10.1042/BA20060221.
  • Lakshmanan V., Rhee K., Daily J. 2011. Metabolomics and malaria biology. Molecular and Biochemical Parasitology, 175, 104–111. DOI: http://dx.doi.org/10.1016/j.molbiop2012.
  • Lakshmanan V., Rhee K., Wang W., Yu Y., Khafizov K., Fiser A., Wu P., Ndir O., Mboup S., Ndiaye D., Daily J. 2012. Metabolomic analysis of patient plasma yields evidence of plant-likelinolenic acid metabolism in Plasmodium falciparum. Journal of Infectious Diseases, 206, 238–248. DOI: 10.1093/infdis/jis339.
  • Lindmark D., van Keulen H., Paget T., Jarroll E. 2011. Giardia metabolism. In: S. Svärd and H. Luján, (Eds.), Giardia. New York, Springer, Chapter 8, 127–137.
  • Lisec J., Meyer R., Steinfath M., Redestig H., Becher M., Witucka-Wall H., Fiehn O., Törjék O., Selbig J., Altmann T., Willmitzer L. 2008. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal: for Cell and Molecular Biology, 53, 960–972. DOI: 10.1111/j.1365-313X.2007.03383.x.
  • Maier K., Hofmann U., Reuss M., Mauch K. 2008. Identification of metabolic fluxes in hepatic cells from transient 13C-labeling experiments: Part II. Flux estimation. Biotechnology and Bioengineering, 100, 355–370. DOI: 10.1002/bit.21746.
  • Meng Q., Mäkinen V.P., Luk H., Yang X. 2013. Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases. Current Cardiovascular Risk Report, 7, 73–83. DOI: 10.1007/s12170-012-0280-y
  • Nevedomskaya E., Mayboroda O., Deelder A. 2011. Cross-platform analysis of longitudinal data in metabolomics. Molecular Biosystems, 7, 3214–3222. DOI: 10.1039/C1MB05280B.
  • Pedersen K., Kristensen T., Loeschcke V., Petersen B.O., Duus J., Nielsen N., Malmendal A. 2008. Metabolomic signatures of inbreeding at benign and stressful temperatures in Drosophila melanogaster. Genetics, 180, 1233–1243. DOI: 10.1534/genetics.108.089144.
  • Rabinowitz J. 2007. Cellular metabolomics of Escherichia coli. Expert Review of Proteomics, 4, 187–198. DOI: 10.1586/14789450.4.2.187.
  • Russell C., Rahman A., Mohammed R. 2013. Application of genomics, proteomics and metabolomics in drug discovery, development and clinic. Therapeutic Delivery, 4, 395–413. DOI: 10.4155/tde.13.4.
  • Scheltema R., Decuypere S., T’Kindt R., Dujardin J., Coombs G., Breitling R. 2010. The potential of metabolomics for Leishmania research in the post-genomics era. Parasitology, 137, 1291–1302. DOI: http://dx.doi.org/10.1017/S0031182009992022.
  • Shulaev V. 2006. Metabolomics technology and bioinformatics. Briefings in Bioinformatics, 7, 128–39. DOI: 10.1093/bib/bbl012.
  • Sun G., Yang K., Zhao Z., Guan S., Han X., Gross R. 2007. Shotgun metabolomics approach for the analysis of negatively charged water — soluble cellular metabolites from mouse heart tissue. Analytical Chemistry, 79, 6629–6640. DOI: 10.1021/ac07 0843+
  • Trauger S., Kalisak E., Kalisiak J., Morita H., Weinberg M., Menon A., Poole F. Adams M., Siuzdak G. 2008. Correlating the transcriptome, proteome and metabolome in the environmental adaptation of hyperthermophile. Journal of Proteome Research, 7, 1027–1035. DOI: 10.1021/pr700609.
  • Vincent I., Creek D., Burgess K., Woods D., Burchmore R., Barrett M. 2012. Untargeted metabolomics reveals a lack of synergy between nifurtimox and eflornithine against Trypanosoma brucei. PLoS Neglected Tropical Disease, 6, e1618. DOI: 10.1371/journal.pntd.0001618.

Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.agro-512fc694-627c-405d-965e-af99e52cd17d
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